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contributors:team_1_page [2015/05/03 23:39] jennie [Programs used] |
contributors:team_1_page [2015/05/03 23:41] jennie [Programs used] |
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===KmerGenie=== | ===KmerGenie=== | ||
- | KmerGenie estimates the best k-mer length for genome //de novo// assembly. Webpage: http://kmergenie.bx.psu.edu/. | + | KmerGenie estimates the best k-mer length for genome //de novo// assembly (/campusdata/BME235/bin/kmergenie-1.6972). Webpage: http://kmergenie.bx.psu.edu/. |
===Musket=== | ===Musket=== | ||
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===Skewer=== | ===Skewer=== | ||
- | Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/S15_assemblies/SOAPdenovo2/adapterRemovalTask/skewer_run). Webpage: http://sourceforge.net/projects/skewer/. | + | Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/bin/skewer-0.1.123-linux-x86_64). Webpage: http://sourceforge.net/projects/skewer/. |