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--- contributors:team_1_page [2015/05/03 23:23]
jennie [Programs used]
+++ contributors:team_1_page [2015/05/03 23:41]
jennie [Programs used]
@@ Line 17: / Line 17: @@
 =====Programs used=====
-===Skewer===
-Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/S15_assemblies/SOAPdenovo2/adapterRemovalTask/skewer_run). Webpage: http://sourceforge.net/projects/skewer/.
 ===GCC===
-GCC is a compiler for the GNU operating system (/campusdata/BME235/bin). Webpage: https://gcc.gnu.org/.
+GCC is a compiler for the GNU operating system (/campusdata/BME235/bin/gcc-4.9.2). Webpage: https://gcc.gnu.org/.
+===KmerGenie===
+KmerGenie estimates the best k-mer length for genome //de novo// assembly (/campusdata/BME235/bin/kmergenie-1.6972). Webpage: http://kmergenie.bx.psu.edu/.
+===Musket===
+Musket is a multistage k-mer spectrum based error corrector for Illumina short read data (/campusdata/BME235/bin/musket). Webpage: http://musket.sourceforge.net/.
+===Skewer===
+Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/bin/skewer-0.1.123-linux-x86_64). Webpage: http://sourceforge.net/projects/skewer/.

Banana Slug Genomics