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contributors:team_1_page [2015/05/03 23:18] jennie created |
contributors:team_1_page [2015/05/03 23:41] jennie [Programs used] |
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=====Programs used===== | =====Programs used===== | ||
- | The program, its location, and a brief explanation of what the program does | ||
- | |||
- | ===Skewer=== | ||
- | Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/S15_assemblies/SOAPdenovo2/adapterRemovalTask/skewer_run). Webpage: http://sourceforge.net/projects/skewer/. | ||
===GCC=== | ===GCC=== | ||
- | GCC is a compiler for the GNU operating system (/campusdata/BME235/bin). Webpage: https://gcc.gnu.org/. | + | GCC is a compiler for the GNU operating system (/campusdata/BME235/bin/gcc-4.9.2). Webpage: https://gcc.gnu.org/. |
+ | |||
+ | ===KmerGenie=== | ||
+ | KmerGenie estimates the best k-mer length for genome //de novo// assembly (/campusdata/BME235/bin/kmergenie-1.6972). Webpage: http://kmergenie.bx.psu.edu/. | ||
+ | |||
+ | ===Musket=== | ||
+ | Musket is a multistage k-mer spectrum based error corrector for Illumina short read data (/campusdata/BME235/bin/musket). Webpage: http://musket.sourceforge.net/. | ||
+ | |||
+ | ===Skewer=== | ||
+ | Skewer is an adapter trimmer for Illumina paired-end sequences (/campusdata/BME235/bin/skewer-0.1.123-linux-x86_64). Webpage: http://sourceforge.net/projects/skewer/. | ||