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contributors:contributors [2011/03/30 03:52]
svohr
contributors:contributors [2015/09/25 20:09] (current)
ceisenhart
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-====== Contributors ​to UCSC Banana Slug Genome Assembly (BME 235) ======+======Contributors====== 
 +A list of all people (past and present) that have worked on the project. ​ People marked with a bold **contributor** tag are current contributors. ​
  
-===== Contributors for Spring 2011 include the following: ​===== +=====2015===== 
 +For the 2015 BME 235 class the class was split into five different teams. Each team was given an assembly program to work with throughout the quarter. ​
  
 +===Roster===
 +| Ed Green | ed@soe.ucsc.edu | Teacher |  ​
 +| Kevin Karplus | karplus@soe.ucsc.edu| Teacher, **contributor** | 
 +| Charles Cole | chkcole@ucsc.edu | Student, **contributor** | 
 +| Kyle McGovern | kmcgover@ucsc.edu | Student | 
 +| Jake Houser | jdhouser@ucsc.edu | Student |
 +| Jennie Richardson ​ | jemricha@ucsc.edu | Student |
 +| Thomas Matthew| thjmatth@ucsc.edu | Student | 
 +| Charles Markello | cmarkell@ucsc.edu | Student, **contributor** | 
 +| Nedda Saremi | nsaremi@ucsc.edu | Student | 
 +| Josh Espinoza | | Student |
 +| Christopher Kan | | Student | 
 +| Audry Musselman-Brown | | Student | 
 +| Jared Copher | jcopher@ucsc.edu | Student, **contributor**| ​
 +| Feal | efeal@ucsc.edu | Student | 
 +| Sidra Hussain | sihussai@ucsc.edu | Student | 
 +| Gepoliano Chaves | gchaves@ucsc.edu | Student | 
 +| Natasha Dudek | natasha@dudek.org | Student, **contributor** | 
 +| Robert Calef | rcalef@ucsc.edu | Student | 
 +| Christopher Eisenhart | ceisenha@ucsc.edu | Student, **contributor** | 
 +| Daren Liu | darenliu@berkley.edu | Past external contributor | 
 +=== Assembly Teams ===
 +| Number | Team members | Assembler | Team page |
 +| 1 | Cole, McGovern, Houser, Richardson | [[http://​jgi.doe.gov/​data-and-tools/​meraculous/​|Meraculous]] | [[contributors:​team_1_page| Team 1 ]]|
 +| 2 | Matthew, Markello, Saremi | [[http://​soap.genomics.org.cn/​soapdenovo.html|SOAP denovo]] | [[contributors:​team_2_page| Team 2]]|
 +| 3 | Espinoza, Kan, Musselman-Brown | [[ https://​github.com/​jts/​sga|SGA]] | [[contributors:​team_3_page| Team 3]] |
 +| 4 | Copher, Feal, Hussain | [[http://​www.bcgsc.ca/​platform/​bioinfo/​software/​abyss|ABySS]] | [[contributors:​team_4_page| Team 4 ]]|
 +| 5 | Chaves, Calef, Dudek, Eisenhart | [[ http://​www.broadinstitute.org/​software/​discovar/​blog/​|Discovar denovo]] | [[contributors:​team_5_page| Team 5 ]]|
  
-====Samuel Vohr==== +=====2011===== 
-{{:​sam_150x200.png|Sam}} +===Roster=== 
-SOE email: svohr\\ +|Kevin Karplus | karplus@soe.ucsc.edu| Teacher ​|  
-{{editor>?​svohr&}} +|Edward Liaw |eyliaw@soe.ucsc.edu| Student |  
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​+|Samuel Vohr |svohr@soe.ucsc.edu| Student |  
 +|Patricia Chan| | Student | 
  
-===== Contributors for Spring ​2010 include the following: ​=====  +=====2010===== 
- +===Roster=== 
-====Galt Barber==== +|Kevin Karplus | karplus@soe.ucsc.edu| Teacher, contributor |  
-{{:​galt200b.jpg ​|Galt Barber}} +|Jeff Long | | Student |  ​ 
-soe email address: galt +|Herbert Lee |hlee@soe.ucsc.edu| Student |  
-{{editor>?​galt&​}} +|Hyunsung John Kim| hyjkim@soe.ucsc.edu| ​Student |  
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +|Michael Cusack| mpcusack@soe.ucsc.edu| Student |  
- +|Jonathan Magasin| | Student |  
-====Michael Cusack==== +|Dany Steaste | | Student | 
-mpcusack@soe +|Galt Barber | galt@soe.ucsc.edu ​| Contributor |  
-{{:​michael200b.jpg |Michael Cusack}} +|John St. John | jstjohn@soe.ucsc.edu | Student |  
-{{editor>?​mpcusack&​}} +|Chris Brumbaugh | cbrumbau@soe.ucsc.edu | Student ​
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +|Shyamini Vasili | svasili@soe.ucsc.edu | Student | 
- +|Jenny Draper | learithe@soe.ucsc.edu | 
-====Jenny Draper==== +|Patricia Chan ||
-{{http://​users.soe.ucsc.edu/​~learithe/​JDraper_Alcatraz_150p.jpg }} +
-SOE email: learithe\\ +
-[[http://​users.soe.ucsc.edu/​~learithe/​]] +
- +
-{{editor>?​learithe&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Kevin Karplus==== +
-{{http://​users.soe.ucsc.edu/​~karplus/​photos/​Kevin-head-2008-150x200.jpg ​|photo of Kevin Karplus}} +
-[[http://​users.soe.ucsc.edu/~karplus]] +
-{{editor>?​karplus&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Jeffrey C. Long==== +
-{{jeff200b.jpg ​|Jeffrey C. Long}} +
-[[http://​users.soe.ucsc.edu/​~jlong/​]] +
-{{editor>?​jlong&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Shyamini Vasili==== +
-{{shyamini200b.jpg ​|Shyamini Vasili}} +
-e-mail id - svasili@soe.ucsc.edu +
-{{editor>?​svasili&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====John St. John==== +
-{{:​johnstjohnhead.gif ​|Photo of John St. John}} +
-SOE email: ​jstjohn\\ +
-[[http://​www.johnstjohn.com/]] +
-{{editor>?​jstjohn&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Chris Brumbaugh==== +
-{{:​chris_brumbaugh_150x200.jpg ​|Chris Brumbaugh}} +
-SOE e-mail address: ​cbrumbau\\ +
-{{editor>?​cbrumbau&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Herbert Lee==== +
-{{:​herbertlee.jpg |Herbert Lee}} +
-SOE email: hlee\\ +
-{{editor>?​hlee&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-====Hyunsung John Kim==== +
-{{:​john_kim.jpg ​|Hyunsung John Kim}} +
-SOE email: hyjkim\\ +
-{{editor>?​hyjkim&​}} +
-<​HTML><​br style="​clear:​both"​ /><br /><hr /></​HTML>​ +
- +
-===== Unix commands to format portrait images ===== +
- +
-Here are a couple of Unix commands that may help you get your images in a standard format for this page: +
- +
-To rotate files in unix 90 degrees clockwise you can use **jpegtran**. +
- +
-    jpegtran -rot 90 Jeff.JPG > Jeff.JPG +
- +
-To get a standard screen crop I was using [[http://​picasa.google.com/​mac/​|Picasa]] to do a 4:3 crop (instead of a manual crop) and then saving the image and resizing it. +
- +
-To resize the image to 200x150 you can use **convert**. +
- +
-    convert -size 200x150 Jeff.JPG -resize 200x150 +profile '​*'​ Jeff200.jpg +
- +
-If you would like me to post your picture and details, feel free to email me a pic and your homepage address. --- //[[jlong@soe.ucsc.edu|Jeff Long]]//+
contributors/contributors.1301457143.txt.gz · Last modified: 2011/03/30 03:52 by svohr