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--- contributors:contributors [2015/07/16 17:51]
ceisenhart Archived
+++ contributors:contributors [2015/08/31 20:08]
ceisenhart added a label for students/teachers/contributors.
@@ Line 1: / Line 1: @@
-====== Contributors to UCSC Banana Slug Genome Assembly (BME 235) ======
+======Contributors======
+A list of all people (past and present) that have worked on the project.  People marked with a bold **contributor** tag are current contributors.
-===== Contributors for Spring 2011 include the following: =====
+=====2015=====
+For the 2015 BME 235 class the class was split into five different teams. Each team was given an assembly program to work with throughout the quarter.
+===Roster===
+| Ed Green | ed@soe.ucsc.edu | Teacher |
+| Kevin Karplus | karplus@soe.ucsc.edu| Teacher, **contributor** |
+| Charles Cole | chkcole@ucsc.edu | Student, **contributor** |
+| Kyle McGovern | kmcgover@ucsc.edu | Student |
+| Jake Houser | jdhouser@ucsc.edu | Student |
+| Jennie Richardson  | jemricha@ucsc.edu | Student |
+| Thomas Matthew| thjmatth@ucsc.edu | Student |
+| Charles Markello | cmarkell@ucsc.edu | Student, **contributor** |
+| Nedda Saremi | nsaremi@ucsc.edu | Student |
+| Josh Espinoza | | Student |
+| Christopher Kan | | Student |
+| Audry Musselman-Brown | | Student |
+| Jared Copher | jcopher@ucsc.edu | Student|
+| Feal | efeal@ucsc.edu | Student |
+| Sidra Hussain | sihussai@ucsc.edu | Student |
+| Gepoliano Chaves | gchaves@ucsc.edu | Student |
+| Natasha Dudek | natasha@dudek.org | Student, **contributor** |
+| Robert Calef | rcalef@ucsc.edu | Student |
+| Christopher Eisenhart | ceisenha@ucsc.edu | Student, **contributor** |
+| Daren Liu | darenliu@berkley.edu | **External contributor** |
+=== Assembly Teams ===
+| Number | Team members | Assembler | Team page |
+| 1 | Cole, McGovern, Houser, Richardson | [[http://jgi.doe.gov/data-and-tools/meraculous/|Meraculous]] | [[contributors:team_1_page| Team 1 ]]|
+| 2 | Matthew, Markello, Saremi | [[http://soap.genomics.org.cn/soapdenovo.html|SOAP denovo]] | [[contributors:team_2_page| Team 2]]|
+| 3 | Espinoza, Kan, Musselman-Brown | [[ https://github.com/jts/sga|SGA]] | [[contributors:team_3_page| Team 3]] |
+| 4 | Copher, Feal, Hussain | [[http://www.bcgsc.ca/platform/bioinfo/software/abyss|ABySS]] | [[contributors:team_4_page| Team 4 ]]|
+| 5 | Chaves, Calef, Dudek, Eisenhart | [[ http://www.broadinstitute.org/software/discovar/blog/|Discovar denovo]] | [[contributors:team_5_page| Team 5 ]]|
-====Samuel Vohr====
+=====2011=====
-{{:sam_150x200.png|Sam}}
+===Roster===
-SOE email: svohr\\
+|Kevin Karplus | karplus@soe.ucsc.edu| Teacher |
-{{editor>?svohr&}}
+|Edward Liaw |eyliaw@soe.ucsc.edu| Student |
-<HTML><br style="clear:both" /><br /><hr /></HTML>
+|Samuel Vohr |svohr@soe.ucsc.edu| Student |
+|Patricia Chan| | Student |
-====Edward Liaw====
+=====2010=====
-{{:edward-liaw-150x200.jpg|}}SOE email: eyliaw\\
+===Roster===
-{{editor>?eyliaw&}}
+|Kevin Karplus | karplus@soe.ucsc.edu| Teacher, contributor |
-<HTML><br style="clear:both" /><br /><hr /></HTML>
+|Jeff Long | | Student |
+|Herbert Lee |hlee@soe.ucsc.edu| Student |
-===== Contributors for Spring 2010 include the following: =====
+|Hyunsung John Kim| hyjkim@soe.ucsc.edu| Student |
+|Michael Cusack| mpcusack@soe.ucsc.edu| Student |
-====Galt Barber====
+|Jonathan Magasin| | Student |
-{{:galt200b.jpg |Galt Barber}}
+|Dany Steaste | | Student |
-soe email address: galt
+|Galt Barber | galt@soe.ucsc.edu | Contributor |
-{{editor>?galt&}}
+|John St. John | jstjohn@soe.ucsc.edu | Student |
-<HTML><br style="clear:both" /><br /><hr /></HTML>
+|Chris Brumbaugh | cbrumbau@soe.ucsc.edu | Student |
+|Shyamini Vasili | svasili@soe.ucsc.edu | Student |
-====Michael Cusack====
+|Jenny Draper | learithe@soe.ucsc.edu |
-mpcusack@soe
+|Patricia Chan ||
-{{:michael200b.jpg |Michael Cusack}}
-{{editor>?mpcusack&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Jenny Draper====
-{{http://users.soe.ucsc.edu/~learithe/JDraper_Alcatraz_150p.jpg }}
-SOE email: learithe\\
-[[http://users.soe.ucsc.edu/~learithe/]]
-{{editor>?learithe&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Kevin Karplus====
-{{http://users.soe.ucsc.edu/~karplus/photos/Kevin-head-2008-150x200.jpg |photo of Kevin Karplus}}
-[[http://users.soe.ucsc.edu/~karplus]]
-{{editor>?karplus&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Jeffrey C. Long====
-{{jeff200b.jpg |Jeffrey C. Long}}
-[[http://users.soe.ucsc.edu/~jlong/]]
-{{editor>?jlong&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Shyamini Vasili====
-{{shyamini200b.jpg |Shyamini Vasili}}
-e-mail id - svasili@soe.ucsc.edu
-{{editor>?svasili&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====John St. John====
-{{:johnstjohnhead.gif |Photo of John St. John}}
-SOE email: jstjohn\\
-[[http://www.johnstjohn.com/]]
-{{editor>?jstjohn&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Chris Brumbaugh====
-{{:chris_brumbaugh_150x200.jpg |Chris Brumbaugh}}
-SOE e-mail address: cbrumbau\\
-{{editor>?cbrumbau&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Herbert Lee====
-{{:herbertlee.jpg |Herbert Lee}}
-SOE email: hlee\\
-{{editor>?hlee&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-====Hyunsung John Kim====
-{{:john_kim.jpg |Hyunsung John Kim}}
-SOE email: hyjkim\\
-{{editor>?hyjkim&}}
-<HTML><br style="clear:both" /><br /><hr /></HTML>
-===== Unix commands to format portrait images =====
-Here are a couple of Unix commands that may help you get your images in a standard format for this page:
-To rotate files in unix 90 degrees clockwise you can use **jpegtran**.
-    jpegtran -rot 90 Jeff.JPG > Jeff.JPG
-To get a standard screen crop I was using [[http://picasa.google.com/mac/|Picasa]] to do a 4:3 crop (instead of a manual crop) and then saving the image and resizing it.
-To resize the image to 200x150 you can use **convert**.
-    convert -size 200x150 Jeff.JPG -resize 200x150 +profile '*' Jeff200.jpg
-If you would like me to post your picture and details, feel free to email me a pic and your homepage address. --- //[[jlong@soe.ucsc.edu|Jeff Long]]//

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