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--- banana_slug_biology [2010/04/24 04:02]
svasili
+++ banana_slug_biology [2010/04/30 22:05]
jlong Presentation of John Pearse and Jan Leonard
@@ Line 1: / Line 1: @@
 ======Banana Slug Biology======
+===== Presentation of John Pearse and Jan Leonard =====
+Presented to the BME235 Slug Genome class on April 23, 2010, this website [[http://compbio.soe.ucsc.edu/slugGenome/|http://compbio.soe.ucsc.edu/slugGenome/]] contains a pdf "All About Banana Slugs".
 =====Taxonomy=====
 The term "banana slug" refers to any member of the genus //Ariolimax//, of which there are three species. They are part of the mollusc superfamily Arionoidea, which contains most terrestrial air-breathing slugs.  Within //Ariolimax//, there are three species: //A. columbianus//, //A. californicus//, and //A. dolichophallus//, which is the UC Santa Cruz mascot.
@@ Line 27: / Line 31: @@
 To find the rather sparse literature on //A. dolichophallus// requires doing sensitive literature searches, then weeding the results to get higher specificity.  This section should list searches tried, how many hits they got, and what sort of specificity they had.  The results should be collected in the Annotated Bibliography section.
+  * Google Books search
+    * //dolichophallus// as the sole keyword gets 147 hits.  Many of them are not relevant (wrong genus).
+    * //dolichophallus -xenophthalmodes// reduces the hits to 129
+    * //dolichophallus -xenophthalmodes -brioptera -"x dolichophallus"// reduces the hits to 125.  Not all are relevant, but it looks like at least half are.  I have not added these to the list below, but I recommend that one of the students start doing so. --- //[[karplus@soe.ucsc.edu|Kevin Karplus]] 2010/04/26 13:14//
+    * //ariolimax// as the sole keyword gets 739 hits---probably too many for us to process.
+    * //ariolimax dolichophallus// gets 47 hits, which are probably all relevant.
+  * Google scholar search
+    * //ariolimax dolichophallus// gets 48 hits, which are probably all relevant.  There is most likely some overlap with the Google Books search.
+    * //ariolimax// alone gets 743 hits---again too many for us.
+    * //dolichiphallus// alone gets 73, some of which are wrong genus.
 ===== Annotated Bibliography =====
+I have uploaded a long bibliography by Janet Leonard {{:ariolimax_bibliography_janet_leonard.doc}}
+Please extract citations from there and work them into this bibliography.
+She has a lot of older works that would be difficult to find electronically, but does not include anything newer than 2002, when she created the bibliography.
+==== General slug biology ====
+  * **Slugs: A Guide to the Invasive and Native Fauna of California**[(cite:california_slugs>
+Slugs: A Guide to the Invasive and Native Fauna of California\\
+Publication Number: 8336\\
+Author: RORY MC DONNELL\\
+Inventory Type: PDF File\\
+ISBN-13: 978-1-60107-564-2
+Copyright Date: 2009\\
+Length: 21 pp.\\
+url: [[http://anrcatalog.ucdavis.edu/pdf/8336.pdf]].)]
+  * **Field guide to the slug**[(cite:field_guide>
+Field guide to the slug by David George Gordon, Western Society of Malcologists, Published in Sasquatch field guide series in 1950. ISBN 1-57061-011-8\\
+url: [[http://books.google.com/books?hl=en&lr=&id=aj-5iUAjvjgC&oi=fnd&pg=PA5&dq=Ariolimax+dolichophallus&ots=wQ60VTR3fN&sig=SEzmpgFPljoPh0cvf93v0U-HICU#v=onepage&q&f=false]].)]
+==== Taxonomy and anatomy for Ariolimax ====
+  * **Revision of the Giant West Coast Land Slugs of the Genus Ariolimax Moerch**[(cite:giant_west_slugs_review>
+Revision of the Giant West Coast Land Slugs of the Genus Ariolimax Moerch (Pulmonata: Arionidae)\\
+Albert R. Mead\\
+American Midland Naturalist, Vol. 30, No. 3 (Nov., 1943), pp. 675-717\\
+Published by: The University of Notre Dame\\
+Stable URL: [[http://www.jstor.org/stable/2421208]].)]
@@ Line 40: / Line 85: @@
 doi:[[http://dx.doi.org/10.1111/j.1420-9101.2007.01331.x|10.1111/j.1420-9101.2007.01331.x]].)]
-  * **Palatability of monoterpenoid compositional types of Satureja douglasii to a generalist molluscan herbivore, Ariolimax dolichophallus**[(cite:palatability>
+==== Sexual behavior ====
-Randy L. Rice, David E. Lincoln, Jean H. Langenheim, Palatability of monoterpenoid compositional types of Satureja douglasii to a generalist molluscan herbivore, Ariolimax dolichophallus, Biochemical Systematics and Ecology, Volume 6, Issue 1, 1978, Pages 45-53, ISSN 0305-1978.\\
-doi:[[http://dx.doi.org/10.1016/0305-1978(78)90023-6|10.1016/0305-1978(78)90023-6]].)]
   * **The darting game in snails and slugs**[(cite:darting_game>
 Menno Schilthuizen, The darting game in snails and slugs, Trends in Ecology & Evolution, Volume 20, Issue 11, November 2005, Pages 581-584, ISSN 0169-5347.\\
 doi:[[http://dx.doi.org/10.1016/j.tree.2005.08.014|10.1016/j.tree.2005.08.014]].)]
-  * **Effect of mating history on gender preference in the hermaphroditic snail Physa acuta**[(cite:mating_history>
-Benoit Facon, Virginie Ravigne, Laure Sauteur, Jerome Goudet, Effect of mating history on gender preference in the hermaphroditic snail Physa acuta, Animal Behaviour, Volume 74, Issue 5, November 2007, Pages 1455-1461, ISSN 0003-3472.\\
-doi:[[http://dx.doi.org/10.1016/j.anbehav.2007.02.019|10.1016/j.anbehav.2007.02.019]].)]
-//Why is this paper here? It seems to be about a completely different organism.// --- //[[karplus@soe.ucsc.edu|Kevin Karplus]] 2010/04/23 07:07//
   * **Penis-biting slugs: wild claims and confusions**[(cite:penis_biting>
@@ Line 60: / Line 98: @@
 Nils Anthes, Annika Putz, Nico K. Michiels, Sex role preferences, gender conflict and sperm trading in simultaneous hermaphrodites: a new framework, Animal Behaviour, Volume 72, Issue 1, July 2006, Pages 1-12, ISSN 0003-3472.\\
 doi:[[http://dx.doi.org/10.1016/j.anbehav.2005.09.017|10.1016/j.anbehav.2005.09.017]].)]
-  * **Revision of the Giant West Coast Land Slugs of the Genus Ariolimax Moerch**[(cite:giant_west_slugs_review>
-Revision of the Giant West Coast Land Slugs of the Genus Ariolimax Moerch (Pulmonata: Arionidae)\\
-Albert R. Mead\\
-American Midland Naturalist, Vol. 30, No. 3 (Nov., 1943), pp. 675-717\\
-Published by: The University of Notre Dame\\
-Stable URL: [[http://www.jstor.org/stable/2421208]].)]
   * **Sexual conflict and partner manipulation in the banana slug, Ariolimax dolichophallus**[(cite:partner_manipulation>
@@ Line 104: / Line 135: @@
 doi:[[http://dx.doi.org/10.1093/icb/45.5.856|10.1093/icb/45.5.856]].)]
-  * **Slugs: A Guide to the Invasive and Native Fauna of California**[(cite:california_slugs>
-Slugs: A Guide to the Invasive and Native Fauna of California\\
-Publication Number: 8336\\
-Author: RORY MC DONNELL\\
-Inventory Type: PDF File\\
-ISBN-13: 978-1-60107-564-2
-Copyright Date: 2009\\
-Length: 21 pp.\\
-url: [[http://anrcatalog.ucdavis.edu/pdf/8336.pdf]].)]
-//I think all the Satureja douglasii papers, which only mention A. dolichophallus in passing as something that eats them, should probably be moved to a separate subsection.// --- //[[karplus@soe.ucsc.edu|Kevin Karplus]] 2010/04/23 07:07//
+  * **The Evolution of male and female reproductive traits in simultaneously hermaphroditic terrestrial gastropods**[(cite:reproductive_traits>
+The Evolution of male and female reproductive traits in simultaneously hermaphroditic terrestrial gastropods.\\
+Kathleen Beese, Doctoral thesis:2003-2007. Department of Environmental Sciences, University of Basel, Switzerland.\\
+url: [[http://edoc.unibas.ch/577/1/DissB_7878.pdf]].)]
+==== Ariolimax Columbianus and Ariolimax Californicus ====
+  * **The Edibility of Polygyra and Ariolimax** A short note of a German man from Clark County Oregon who claims //Ariolimax Columbianus// has "good flavor" after proper preparation. The slug is washed in dillute vinegar to remove slime, cleaned like a fish and fried in butter. [(cite:Ariolimax_palatibility>
+Allen, J.A. 1916. Edibility of Polygyra and Ariolimax. Nautilus 29, 143.\\
+url: [[http://biodiversitylibrary.org/page/1815918]].)]
+==== Things Banana Slugs Eat ====
+=== Satureja douglasii ===
+    * **Palatability of monoterpenoid compositional types of Satureja douglasii to a generalist molluscan herbivore, Ariolimax dolichophallus**[(cite:palatability>
+Randy L. Rice, David E. Lincoln, Jean H. Langenheim, Palatability of monoterpenoid compositional types of Satureja douglasii to a generalist molluscan herbivore, Ariolimax dolichophallus, Biochemical Systematics and Ecology, Volume 6, Issue 1, 1978, Pages 45-53, ISSN 0305-1978.\\
+doi:[[http://dx.doi.org/10.1016/0305-1978(78)90023-6|10.1016/0305-1978(78)90023-6]].)]
   * **Variation of Satureja douglasii monoterpenoids in relation to light intensity and herbivory**[(cite:monoterpenoid_variation>
@@ Line 132: / Line 174: @@
 doi:[[http://dx.doi.org/10.1016/0305-1978(78)90021-2|10.1016/0305-1978(78)90021-2]].)]
-//I think all the Hymenaea courbaril papers, which only mention A. dolichophallus in passing as something that eats them, should probably be moved to a separate subsection.// --- //[[karplus@soe.ucsc.edu|Kevin Karplus]] 2010/04/23 07:07//
+=== Hymenaea courbaril ===
   * **Effect of moisture stress on composition and yield in leaf resin of Hymenaea courbaril**[(cite:moister_stress2>
@@ Line 141: / Line 183: @@
 David R. Crankshaw, Jean H. Langenheim, Variation in terpenes and phenolics through leaf development in Hymenaea and its possible significance to herbivory, Biochemical Systematics and Ecology, Volume 9, Issues 2-3, 10 November 1981, Pages 115-124, ISSN 0305-1978.\\
 doi:[[http://dx.doi.org/10.1016/0305-1978(81)90029-6|10.1016/0305-1978(81)90029-6]].)]
-  * **Field guide to the slug**[(cite:field_guide>
-Field guide to the slug by David George Gordon, Western Society of Malcologists, Published in Sasquatch field guide series in 1950. ISBN 1-57061-011-8\\
-url: [[http://books.google.com/books?hl=en&lr=&id=aj-5iUAjvjgC&oi=fnd&pg=PA5&dq=Ariolimax+dolichophallus&ots=wQ60VTR3fN&sig=SEzmpgFPljoPh0cvf93v0U-HICU#v=onepage&q&f=false]].)]
-  * **The Evolution of male and female reproductive traits in simultaneously hermaphroditic terrestrial gastropods**[(cite:reproductive_traits>
-The Evolution of male and female reproductive traits in simultaneously hermaphroditic terrestrial gastropods.\\
-Kathleen Beese, Doctoral thesis:2003-2007. Department of Environmental Sciences, University of Switzerland.\\
-url: [[http://edoc.unibas.ch/577/1/DissB_7878.pdf]].)]
@@ Line 155: / Line 188: @@
 <refnotes>notes-separator: none</refnotes>
 ~~REFNOTES cite~~

Banana Slug Genomics

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