assemblies:assemblies
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assemblies:assemblies [2015/07/16 19:15] ceisenhart |
assemblies:assemblies [2015/07/28 06:29] ceisenhart ↷ Page moved from assemblies to assemblies:assemblies |
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| ====Nuclear==== | ====Nuclear==== | ||
| | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | ||
| - | |[[::team_2_page|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,293,889,058 | | | + | |[[contributors:team_2_page|SOAP: Team 2 page]]| 8,033 | 11,000 | 2,293,889,058 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/SOAPdenovo2/SOAPdenovo2_run3_all/soapdenovo2_allAssembly_1.scafSeq.gapclosed | |
| - | |[[::team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| | + | |[[contributors:team_4_page| ABySS: Team 4 page]]| 2,669 | 3,063 | 2,446,362,204| http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/abyss/slug-scaffolds.fa | |
| - | |[[::team_5_page| Discovar de novo: Team 5 page]]| 10,427 | 12,549 | 2,395,797,282 | | | + | |[[contributors:team_5_page| Discovar de novo: Team 5 page]]| 10,427 | 12,549 | 2,395,797,282 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Assemblies/2015/DiscovarDeNovo/KolossusAssembly/discovarDeNovoKolossusAssembly.fasta | |
| ====Mitochondrion==== | ====Mitochondrion==== | ||
| - | [[natasha@dudek.org |Natasha Dudek]] (Discovar //de novo//) re-assembled the [[assemblies::2015::mitochondrion_assembly | mitochondrion]] in 2015 using data from the 2011 and 2010 class as well as new data. | + | [[natasha@dudek.org |Natasha Dudek]] (Discovar //de novo//) re-assembled the [[assemblies::2015::mitochondrion_assembly | mitochondrion]] in 2015. |
| | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | ||
| - | | [[::team_5_page| Discovar de novo: Team 5 page]] | 9,030 | 9,030 | 15,548 | | | + | | [[contributors:team_5_page| Discovar de novo: Team 5 page]] | 9,030 | 9,030 | 15,548 | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Data/2015/mitochondrion/mitochondrion_SW018-9_discovar.fasta | |
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| | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | | Contributing team | Contig N50 | Scaffold N50 | Total bases | Location | | ||
| - | | [[https://users.soe.ucsc.edu/~karplus/| Kevin Karplus]] | | | | | | + | | [[https://users.soe.ucsc.edu/~karplus/| Kevin Karplus]] | | | | {{:computer_resources:assemblies:mitochondrion-draft2.fasta.gz|}} | |
| [[assemblies::2011::mitochondrion_assembly | The 2012 mitochondrion assembly page ]] | [[assemblies::2011::mitochondrion_assembly | The 2012 mitochondrion assembly page ]] | ||
assemblies/assemblies.txt · Last modified: 2015/08/19 20:14 by chkcole
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