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assemblies:2011:mitochondrion_assembly [2015/07/28 15:12] 149.155.218.110 ↷ Links adapted because of a move operation |
assemblies:2011:mitochondrion_assembly [2015/11/01 03:15] karplus [Reads] updated mitochondrion-draft2 link |
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====== Mitochondrial sequence ====== | ====== Mitochondrial sequence ====== | ||
- | The mitochondrion was re assembled in 2015, follow the new assembly here, [[assemblies::2015::mitochondrion_assembly | 2015 Mitochondrion assembly ]]. This page is for the 2012 mitochondrial assembly. | + | The mitochondrion was re assembled in 2015, follow the new assembly here, [[assemblies::2015::mitochondrion_assembly | 2015 Mitochondrion assembly ]]. This page is for the 2011 mitochondrial assembly. |
The first draft sequence is available as {{{{:computer_resources:assemblies:mitochondrion-draft1.fasta.gz|draft1 gzipped fasta file}}. This corresponds to /campusdata/BME235/assemblies/slug/barcode-of-life/map-Illumina-raw-45/consensus-6 on campusrocks. It has 23,642 bases. | The first draft sequence is available as {{{{:computer_resources:assemblies:mitochondrion-draft1.fasta.gz|draft1 gzipped fasta file}}. This corresponds to /campusdata/BME235/assemblies/slug/barcode-of-life/map-Illumina-raw-45/consensus-6 on campusrocks. It has 23,642 bases. | ||
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- | The second draft sequence (with the short repeats expanded and the repeats ordered as best I can from the short-insert reads) is available as {{mitochondrion-draft2.fasta.gz|draft2 gzipped fasta file}}. This corresponds to /campusdata/BME235/assemblies/slug/barcode-of-life/map-Illumina-raw-47/draft on campusrocks. It has 36363 bases. | + | The second draft sequence (with the short repeats expanded and the repeats ordered as best I can from the short-insert reads) is available as {{computer_resources:assemblies:mitochondrion-draft2.fasta.gz|draft2 gzipped fasta file}}. This corresponds to /campusdata/BME235/assemblies/slug/barcode-of-life/map-Illumina-raw-47/draft on campusrocks. It has 36363 bases. |