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archive:summer_2015 [2015/06/11 16:45]
gepoliano
archive:summer_2015 [2015/07/18 13:32] (current)
ceisenhart ↷ Page moved from summer_2015 to archive:summer_2015
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 | Nedda | nsaremi@ucsc.edu | SOAP | Green | | Nedda | nsaremi@ucsc.edu | SOAP | Green |
 | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome,​ I can try and extract the exons, introns, and genes (5'​UTR,​ CDS, 3'​UTR). ​ I wrote some scripts that can do this and confirms with exon-junction motifs. ​ Can't meet weekly since I'll be in SD. | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome,​ I can try and extract the exons, introns, and genes (5'​UTR,​ CDS, 3'​UTR). ​ I wrote some scripts that can do this and confirms with exon-junction motifs. ​ Can't meet weekly since I'll be in SD. |
 +|Robert|calef@soe.ucsc.edu|Discovar|Green|Will start looking into running SOAP gap closer on the Kolossus Discovar assembly, as well as tools for scaffolding with RNA-seq data| 
 +|Charles| chkcole@ucsc.edu| Meraculous| Vollmers| I'm currently working on getting the RNA-Seq data. We have some preliminary stuff I just need to process it and confirm the quality of the libraries. Also, repetitive elements.|
  
  
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   * Meet in PSB 305 (same classroom)   * Meet in PSB 305 (same classroom)
   * once a week   * once a week
-  * Weds at 10:30am or 1:30pm+  * Weds at 1:30pm
  
  
archive/summer_2015.1434066317.txt.gz · Last modified: 2015/06/11 16:45 by gepoliano