archive:summer_2015
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Table of Contents
Summer 2015
Volunteers
Students continuing to Work in the summer. please include a note that briefly describes something you are currently studying or doing for the project
| Name | Team | Lab | note | |
| Jared C | jcopher@ucsc.edu | ABySS | Pourmand | Banana Slug Biology and Mollusk genomics |
| Siddra H | sihussai@ucsc.edu | ABySS | Green | |
| Emilio F | efeal@ucsc.edu | ABySS | ||
| Charles M | cmarkell@ucsc.edu | SOAP | Haussler |
Schedule of meetings
Suggestions for weekly meetings:
- Meet in PSB 305 (same classroom)
Agenda Items
A list of unresolved tasks
- distribute T-shirts
- Decide on a final assembly from working assemblers.
- RNA Assembly
- Annotations
- Heterozygosity
- Non-slug DNA in reads
- How to merge assemblies
- Repeats
- Mitochondria assembly
- Use of old data (2010 and 2011 classes)
- Potentially adapt Discovar contigs for SOAPdenovo scaffolding.
Finished Work
A list of work completed sense BME235 ended.
- Disovar assembly with all shotgun data, accomplished on Kolussus
- SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2
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archive/summer_2015.1433812032.txt.gz · Last modified: 2015/06/08 18:07 by charles
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