Banana Slug Genomics

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

======Summer 2015======

====Volunteers====
Students continuing to Work in the summer.
please include a note that briefly describes something you are currently studying or doing for the project

| Name | E-mail | Team | Lab | note |
| Jared C | jcopher@ucsc.edu | ABySS | Pourmand | Banana Slug Biology and Mollusk genomics |
| Siddra H | sihussai@ucsc.edu | ABySS | Green | |
| Emilio F | efeal@ucsc.edu | ABySS | | |
| Charles M | cmarkell@ucsc.edu | SOAP | Haussler | |
| Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly |
| Chris Eisenhart | ceisenha@ucsc.edu | Discovar | Browser Group | Get it on the browser, finish the assembly with Sspace. I wont be at the meetings as I have to work, I will correspond over email. |
|Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly|
| Nedda | nsaremi@ucsc.edu | SOAP | Green |


====Schedule of meetings====

Suggestions for weekly meetings:

  * Meet in PSB 305 (same classroom)
  * once a week
  * Weds at 10:30am or 1:30pm



====Agenda Items====

A list of unresolved tasks

  * distribute T-shirts
  * Decide on a final assembly from working assemblers.
  * RNA Assembly
  * Annotations
  * Heterozygosity
  * Phylogeny
  * Non-slug DNA in reads
  * How to merge assemblies
  * Repeats
  * Mitochondria assembly
  * Use of old data (2010 and 2011 classes)
  * Potentially adapt Discovar contigs for SOAPdenovo scaffolding.

====Finished Work====

A list of work completed sense BME235 ended.

  * Disovar assembly with all shotgun data, accomplished on Kolussus
  * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2

Banana Slug Genomics

User Tools

Site Tools

Page Tools