This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
archive:summer_2015 [2015/06/11 23:44] gepoliano |
archive:summer_2015 [2015/07/18 20:32] ceisenhart ↷ Page moved from summer_2015 to archive:summer_2015 |
||
---|---|---|---|
Line 15: | Line 15: | ||
| Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
- | |Gepoliano Chaves|gchaves@ucsc.edu|Discovar|Pourmand|My intention is to help in the MiSeq run once we have the libraries ready to go and align the transcript reads against the scaffolds we generated, presumably indexed with Bowtie2| | + | |Robert|calef@soe.ucsc.edu|Discovar|Green|Will start looking into running SOAP gap closer on the Kolossus Discovar assembly, as well as tools for scaffolding with RNA-seq data| |
+ | |Charles| chkcole@ucsc.edu| Meraculous| Vollmers| I'm currently working on getting the RNA-Seq data. We have some preliminary stuff I just need to process it and confirm the quality of the libraries. Also, repetitive elements.| | ||
Line 24: | Line 25: | ||
* Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
* once a week | * once a week | ||
- | * Weds at 10:30am or 1:30pm | + | * Weds at 1:30pm |