archive:summer_2015
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archive:summer_2015 [2015/06/11 23:44] gepoliano |
archive:summer_2015 [2015/06/12 18:11] chkcole |
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| | Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
| - | |Gepoliano Chaves|gchaves@ucsc.edu|Discovar|Pourmand|My intention is to help in the MiSeq run once we have the libraries ready to go and align the transcript reads against the scaffolds we generated, presumably indexed with Bowtie2| | + | |Robert|calef@soe.ucsc.edu|Discovar|Green|Will start looking into running SOAP gap closer on the Kolossus Discovar assembly, as well as tools for scaffolding with RNA-seq data| |
| + | |Charles| chkcole@ucsc.edu| Meraculous| Vollmers| I'm currently working on getting the RNA-Seq data. We have some preliminary stuff I just need to process it and confirm the quality of the libraries. Also, repetitive elements.| | ||
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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