archive:summer_2015
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archive:summer_2015 [2015/06/10 00:14] jolespin |
archive:summer_2015 [2015/06/30 14:30] jaredc [Schedule of meetings] |
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| |Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | |Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | ||
| | Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| - | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs| | + | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | |
| + | |Robert|calef@soe.ucsc.edu|Discovar|Green|Will start looking into running SOAP gap closer on the Kolossus Discovar assembly, as well as tools for scaffolding with RNA-seq data| | ||
| + | |Charles| chkcole@ucsc.edu| Meraculous| Vollmers| I'm currently working on getting the RNA-Seq data. We have some preliminary stuff I just need to process it and confirm the quality of the libraries. Also, repetitive elements.| | ||
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| * Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
| * once a week | * once a week | ||
| - | * Weds at 10:30am or 1:30pm | + | * Weds at 1:30pm |
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| ====Finished Work==== | ====Finished Work==== | ||
| - | A list of work completed sense BME235 ended. | + | A list of work completed since BME235 ended: |
| * Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
| * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | ||
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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