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archive:summer_2015 [2015/06/11 23:45] gepoliano |
archive:summer_2015 [2015/06/11 23:48] calef [Volunteers] |
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| Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
+ | |Robert|calef@soe.ucsc.edu|Discovar|Green|Will start looking into running SOAP gap closer on the Kolossus Discovar assembly, as well as tools for scaffolding with RNA-seq data| | ||