archive:summer_2015
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archive:summer_2015 [2015/06/10 00:15] jolespin |
archive:summer_2015 [2015/06/11 23:45] gepoliano |
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| | Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
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| ====Finished Work==== | ====Finished Work==== | ||
| - | A list of work completed sense BME235 ended. | + | A list of work completed since BME235 ended: |
| * Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
| * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | ||
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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