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archive:summer_2015 [2015/06/09 15:25] karplus [Agenda Items] typo fix |
archive:summer_2015 [2015/06/11 23:44] gepoliano |
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|Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | |Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | ||
| Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
+ | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
+ | |Gepoliano Chaves|gchaves@ucsc.edu|Discovar|Pourmand|My intention is to help in the MiSeq run once we have the libraries ready to go and align the transcript reads against the scaffolds we generated, presumably indexed with Bowtie2| | ||
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====Finished Work==== | ====Finished Work==== | ||
- | A list of work completed sense BME235 ended. | + | A list of work completed since BME235 ended: |
* Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
* SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 |