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archive:summer_2015 [2015/06/09 15:25] karplus [Agenda Items] added longer term questions |
archive:summer_2015 [2015/06/10 00:15] jolespin |
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|Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | |Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | ||
| Nedda | nsaremi@ucsc.edu | SOAP | Green | | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
+ | | Josh | jolespin@ucsc.edu | SGA | Bernick |Once a good assembly is generated and we get a transcriptome, I can try and extract the exons, introns, and genes (5'UTR, CDS, 3'UTR). I wrote some scripts that can do this and confirms with exon-junction motifs. Can't meet weekly since I'll be in SD. | | ||
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- | Longer term: we'll need to decide whether we need more data, particularly for scaffolding. Will Ed's lab be continuing to develop a new mate-pair library procedure, which could give us new libraries to work with? Will the MinION deliver higher-throughput log reads this year, and can we get a run of long DNA through the MinION? | + | Longer term: we'll need to decide whether we need more data, particularly for scaffolding. Will Ed's lab be continuing to develop a new mate-pair library procedure, which could give us new libraries to work with? Will the MinION deliver higher-throughput long reads this year, and can we get a run of long DNA through the MinION? |
====Finished Work==== | ====Finished Work==== |