archive:summer_2015
Differences
This shows you the differences between two versions of the page.
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archive:summer_2015 [2015/06/09 01:04] charles [Finished Work] |
archive:summer_2015 [2015/06/09 07:20] nsaremi |
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| | Emilio F | efeal@ucsc.edu | ABySS | | | | | Emilio F | efeal@ucsc.edu | ABySS | | | | ||
| | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | ||
| + | | Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly | | ||
| + | | Chris Eisenhart | ceisenha@ucsc.edu | Discovar | Browser Group | Get it on the browser, finish the assembly with Sspace. I wont be at the meetings as I have to work, I will correspond over email. | | ||
| + | |Christopher Kan|chkan@ucsc.edu|SGA|Pogson|Will finish SGA Assembly| | ||
| + | | Nedda | nsaremi@ucsc.edu | SOAP | Green | | ||
| Line 17: | Line 21: | ||
| * Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
| + | * once a week | ||
| + | * Weds at 10:30am or 1:30pm | ||
| Line 29: | Line 35: | ||
| * Annotations | * Annotations | ||
| * Heterozygosity | * Heterozygosity | ||
| + | * Phylogeny | ||
| * Non-slug DNA in reads | * Non-slug DNA in reads | ||
| * How to merge assemblies | * How to merge assemblies | ||
| Line 34: | Line 41: | ||
| * Mitochondria assembly | * Mitochondria assembly | ||
| * Use of old data (2010 and 2011 classes) | * Use of old data (2010 and 2011 classes) | ||
| + | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
| ====Finished Work==== | ====Finished Work==== | ||
| Line 41: | Line 48: | ||
| * Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
| - | * SOAPdenovo assembly with all shotgun data, accomplished on edser2 | + | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 |
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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