This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
archive:summer_2015 [2015/06/09 01:04] charles [Finished Work] |
archive:summer_2015 [2015/06/09 02:27] ceisenhart [Volunteers] |
||
---|---|---|---|
Line 10: | Line 10: | ||
| Emilio F | efeal@ucsc.edu | ABySS | | | | | Emilio F | efeal@ucsc.edu | ABySS | | | | ||
| Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | ||
+ | | Natasha | ndudek@ucsc.edu | Discovar | Shapiro | I want to work on finishing the mitochondrion assembly | | ||
+ | | Chris Eisenhart | ceisenha@ucsc.edu | Discovar | Browser Group | Get it on the browser, finish the assembly with Sspace. I wont be at the meetings as I have to work, I will correspond over email. | | ||
Line 17: | Line 19: | ||
* Meet in PSB 305 (same classroom) | * Meet in PSB 305 (same classroom) | ||
+ | * once a week | ||
+ | * Weds at 10:30am or 1:30pm | ||
Line 29: | Line 33: | ||
* Annotations | * Annotations | ||
* Heterozygosity | * Heterozygosity | ||
+ | * Phylogeny | ||
* Non-slug DNA in reads | * Non-slug DNA in reads | ||
* How to merge assemblies | * How to merge assemblies | ||
Line 34: | Line 39: | ||
* Mitochondria assembly | * Mitochondria assembly | ||
* Use of old data (2010 and 2011 classes) | * Use of old data (2010 and 2011 classes) | ||
+ | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
====Finished Work==== | ====Finished Work==== | ||
Line 41: | Line 46: | ||
* Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
- | * SOAPdenovo assembly with all shotgun data, accomplished on edser2 | + | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 |