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archive:summer_2015 [2015/06/09 01:04] charles [Finished Work] |
archive:summer_2015 [2015/06/09 01:14] JaredC [Agenda Items] |
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* Annotations | * Annotations | ||
* Heterozygosity | * Heterozygosity | ||
+ | * Phylogeny | ||
* Non-slug DNA in reads | * Non-slug DNA in reads | ||
* How to merge assemblies | * How to merge assemblies | ||
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* Mitochondria assembly | * Mitochondria assembly | ||
* Use of old data (2010 and 2011 classes) | * Use of old data (2010 and 2011 classes) | ||
+ | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
====Finished Work==== | ====Finished Work==== | ||
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* Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
- | * SOAPdenovo assembly with all shotgun data, accomplished on edser2 | + | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 |