archive:summer_2015
Differences
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archive:summer_2015 [2015/06/09 00:49] JaredC [Agenda Items] |
archive:summer_2015 [2015/06/09 01:14] JaredC [Agenda Items] |
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| | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | | Siddra H | sihussai@ucsc.edu | ABySS | Green | | | ||
| | Emilio F | efeal@ucsc.edu | ABySS | | | | | Emilio F | efeal@ucsc.edu | ABySS | | | | ||
| + | | Charles M | cmarkell@ucsc.edu | SOAP | Haussler | | | ||
| Line 28: | Line 29: | ||
| * Annotations | * Annotations | ||
| * Heterozygosity | * Heterozygosity | ||
| + | * Phylogeny | ||
| * Non-slug DNA in reads | * Non-slug DNA in reads | ||
| * How to merge assemblies | * How to merge assemblies | ||
| Line 33: | Line 35: | ||
| * Mitochondria assembly | * Mitochondria assembly | ||
| * Use of old data (2010 and 2011 classes) | * Use of old data (2010 and 2011 classes) | ||
| + | * Potentially adapt Discovar contigs for SOAPdenovo scaffolding. | ||
| ====Finished Work==== | ====Finished Work==== | ||
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| * Disovar assembly with all shotgun data, accomplished on Kolussus | * Disovar assembly with all shotgun data, accomplished on Kolussus | ||
| + | * SOAPdenovo assembly with all shotgun data and gap closed, accomplished on edser2 | ||
archive/summer_2015.txt · Last modified: 2015/07/18 20:32 by ceisenhart
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