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=== Spring 2015 Syllabus === Class meets M/W/F 9:30-10:40 in PSB 305 For a list of past/present lecture notes please see [[Lecture notes]] | Number | Date | Topic | Lecturer | Lecture Notes | Note taker 1 | Note taker 2 | | 1 | 30 Mar | Course overview & introduction | Green/Karplus | [[lecture_notes:03-30-2015]] | Dudek | Eisenhart | | 2 | 1 Apr | The Biology of the Banana Slug | Leonard / Pearse | [[lecture_notes:04-01-2015]] | Matthew | Saremi | | 3 | 3 Apr | Disection and Sequencing Libraries | Weber / Green | [[lecture_notes:04-03-2015]] | Richardson | Hussain | | 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | | 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Musselman-Brown |jolespin | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Hussain |Eisenhart | | 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole| | 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | | 10 | 20 Apr | Team 1 Report | Team 1 | [[lecture_notes:04-20-2015]] | Chaves| | | 11 | 22 Apr | Team 2 Report | Team 2 | [[lecture_notes:04-22-2015]] | | | | 12 | 24 Apr | Team 3 Report | Team 3 | [[lecture_notes:04-24-2015]] | Chaves| | | 13 | 27 Apr | Team 4 Report | Team 4 | [[lecture_notes:04-26-2015]] | | | | 14 | 29 Apr | Team 5 Report | Team 5 | [[lecture_notes:04-29-2015]] | | | | 15 | 1 May | Strategy Session | Green | [[lecture_notes:05-01-2015]] | Richardson | Markello | | 16 | 4 May | Population Genetics / PSMC | Green | [[lecture_notes:05-04-2015]] | Musselman-Brown | Cole | | 17 | 6 May | RNAseq | Green/? | [[lecture_notes:05-06-2015]] | Musselman-Brown | Richardson | | 18 | 8 May | Team 1 Report | Team 1 | [[lecture_notes:05-08-2015]] | | | | 19 | 11 May | Team 2 Report | Team 2 | [[lecture_notes:05-11-2015]] | | | | 20 | 13 May | Team 3 Report | Team 3 | [[lecture_notes:05-13-2015]] | | | | 21 | 15 May | Team 4 Report | Team 4 | [[lecture_notes:05-15-2015]] | Chaves| | | 22 | 18 May | Team 5 Report | Team 5 | [[lecture_notes:05-18-2015]] | | | | 23 | 20 May | | | [[lecture_notes:05-20-2015]] | Dudek | | | 24 | 22 May | | | [[lecture_notes:05-22-2015]] | JaredC | | | - | 25 May | Holiday | N/A | N/A | N/A | N/A | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | | 27 | 1 Jun | Burrows-Wheeler Transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | |
Discussion
Is it just on my machine, or are others seeing the PDF versions of Ed's slides as having been badly converted from the original format, resulting in bad line breaks?
I converted them from .ppt format on a mac machine, so there may be some formatting issues but the content is all there.
Do we have a copy of Stefan's lecture slides?