archive:spring_2015_syllabus
Media Manager
Namespaces
Choose namespace
Media Files
Files in [root]
- 20mer_miseq_dist.pdf
- 2015/04/17 22:14
- 6.7 KB
- 2012_vs_2015_assemblies.png
- 600×300
- 2015/05/21 22:08
- 6.4 KB
- 20100419_banana_slug_seminar.pdf
- 2015/04/20 17:17
- 3.5 MB
- abysspresentation1.pdf
- 2015/05/05 18:12
- 350.1 KB
- adapterremovalchart.png
- 652×602
- 2015/04/21 16:52
- 50 KB
- alldataprocessedpreqcestdupper.png
- 401×334
- 2015/05/04 18:50
- 33.2 KB
- alldataprocessedpreqcestkmersize.png
- 402×333
- 2015/05/04 18:53
- 58.9 KB
- alldatatrimmeddedup150430.pdf
- 2015/05/04 18:46
- 167.7 KB
- annotation_workshop_ucsc.pdf
- 2015/05/29 18:42
- 1.7 MB
- ariolimax_bibliography_janet_leonard.doc
- 2010/04/24 17:11
- 51.5 KB
- ariolimax_dolichophallus_cox1.pdf
- 2015/05/17 05:15
- 13 KB
- bamstodiscovarwsspace.png
- 634×600
- 2015/05/12 06:00
- 57.7 KB
- bamstofastaflow.png
- 533×478
- 2015/05/01 18:56
- 41.9 KB
- banana_slug_rna.png
- 1176×583
- 2015/05/25 20:02
- 2 MB
- banana_slug_tagmentase_a_a_a.png
- 775×543
- 2015/06/12 18:21
- 1.2 MB
- banana_slug_tagmentase_a_pa_p.png
- 775×543
- 2015/06/12 18:21
- 1.2 MB
- blast_results_10k_scaffolds.png
- 1113×537
- 2015/05/10 15:54
- 280.1 KB
- bme235_meraculous_report_2.pdf
- 2015/05/11 17:38
- 650.3 KB
- bme_235_meraculous_report_1.pdf
- 2015/04/21 09:33
- 314.9 KB
- bs-mk_seqprep_dupremoved_ec_r1.pdf
- 2015/05/21 19:37
- 888.3 KB
- bs-mk_seqprep_dupremoved_ec_r2.pdf
- 2015/05/21 19:37
- 906.6 KB
- bs_mk_noadap_r1.fastq_fastqc_report.pdf
- 2015/05/19 15:19
- 672.9 KB
- bs_mk_noadap_r2.fastq_fastqc_report.pdf
- 2015/05/19 15:20
- 671.5 KB
- cdna_charlessmart_al_pe_p_ashley5_pe_p_al_05202015.png
- 775×543
- 2015/05/25 20:44
- 1.2 MB
- chris_brumbaugh_150x200.jpg
- 150×200
- 2010/04/07 00:26
- 16.8 KB
- config_file.pdf
- 2015/05/08 17:41
- 1.9 KB
- config_file_run2.pdf
- 2015/05/13 19:08
- 15 KB
- cox1.pdf
- 2015/05/17 05:14
- 13 KB
- dbg-assembly-v1.pdf
- 2015/04/20 17:17
- 655.9 KB
- discovar_team_presentation_2.pdf
- 2015/05/20 17:49
- 1 MB
- discovardenovoflowchartwithqc.png
- 746×625
- 2015/05/01 18:32
- 74.5 KB
- ec_merged_data_kmergenie.pdf
- 2015/04/21 19:29
- 407.6 KB
- edward-liaw-150x200.jpg
- 150×200
- 2011/06/12 01:28
- 14.7 KB
- fastqc_bs-mk_catccgg_r1.pdf
- 2015/05/06 22:54
- 901.3 KB
- fastqc_bs-mk_catccgg_r2.pdf
- 2015/05/06 22:54
- 903.8 KB
- fastqc_bs-tag_gtagagg_r1.pdf
- 2015/05/06 20:03
- 330.9 KB
- fastqc_bs-tag_gtagagg_r2.pdf
- 2015/05/06 20:03
- 331.7 KB
- fastqc_bs-tag_seqprep_dupremoved_r1.pdf
- 2015/05/20 16:03
- 908.6 KB
- fastqc_bs-tag_seqprep_dupremoved_r2.pdf
- 2015/05/20 16:03
- 917.2 KB
- fastqc_bs_mk_noadap_r1.pdf
- 2015/05/17 21:41
- 310.1 KB
- fastqc_bs_mk_noadap_r2.pdf
- 2015/05/17 21:41
- 319.1 KB
- fastqc_bs_tag_noadap_pair1.pdf
- 2015/05/17 20:27
- 318.9 KB
- fastqc_bs_tag_noadap_pair2.pdf
- 2015/05/17 20:29
- 327.9 KB
- fastqc_myskewer_41_dupr_r1.pdf
- 2015/05/21 15:35
- 1.4 MB
- fastqc_myskewer_41_dupr_r2.pdf
- 2015/05/21 15:35
- 1.4 MB
- fastqc_skewer_41_seqprep_duprem_r1.pdf
- 2015/05/21 15:40
- 1.4 MB
- fastqc_skewer_41_seqprep_duprem_r2.pdf
- 2015/05/21 15:40
- 1.4 MB
- fastqc_skewer_42_dupremoved_r1.pdf
- 2015/05/21 18:25
- 884.5 KB
- fastqc_skewer_42_dupremoved_r2.pdf
- 2015/05/21 18:25
- 924.4 KB
- fastqc_skewer_run2_sw041_pair1.pdf
- 2015/05/21 15:32
- 1.4 MB
- fastqc_skewer_run2_sw041_pair2.pdf
- 2015/05/21 15:32
- 1.5 MB
- fastqc_sw041-trimmed-pair1_mp1.pdf
- 2015/05/19 15:58
- 660.6 KB
- fastqc_sw041-trimmed-pair2_mp1.pdf
- 2015/05/19 15:58
- 885.5 KB
- fastqc_sw041_1_pair1.pdf
- 2015/05/20 23:17
- 909 KB
- fastqc_sw041_1_pair2.pdf
- 2015/05/20 23:17
- 925.8 KB
- fastqc_sw041_2-trimmed-pair1_mp2.pdf
- 2015/05/19 15:59
- 834.3 KB
- fastqc_sw041_2-trimmed-pair2_mp2.pdf
- 2015/05/19 15:59
- 877 KB
- fastqc_sw041_2_pair1.pdf
- 2015/05/20 23:17
- 909 KB
- fastqc_sw041_2_pair2.pdf
- 2015/05/20 23:17
- 925.8 KB
- fastqc_sw042-trimmed-pair1_mp1.pdf
- 2015/05/19 17:11
- 1.6 MB
- fastqc_sw042-trimmed-pair2_mp1.pdf
- 2015/05/19 17:11
- 1.8 MB
- fastqc_sw042_2-trimmed-pair1_mp2.pdf
- 2015/05/19 17:12
- 1.3 MB
- fastqc_sw042_2-trimmed-pair2_mp2.pdf
- 2015/05/19 17:12
- 1.4 MB
- fastqc_ucsf_bs-mk_catccgg_r1_tr....fastq.gz_fastqc_report.pdf
- 2015/05/18 22:36
- 920.2 KB
- fastqc_ucsf_bs-mk_catccgg_r2_tr....fastq.gz_fastqc_report.pdf
- 2015/05/18 22:36
- 926.6 KB
- fastqtobam.png
- 921×524
- 2015/05/20 01:48
- 92.9 KB
- fastqtobamflow.png
- 759×529
- 2015/05/01 18:50
- 66.9 KB
- fastqtosslib.png
- 770×577
- 2015/05/12 05:43
- 46.8 KB
- feed-icon-28x28.png
- 28×28
- 2010/03/30 20:56
- 1.7 KB
- finalpresentation_bme235.pdf
- 2015/06/09 19:15
- 4.2 MB
- firstbrowsershot.png
- 1241×281
- 2015/05/15 19:14
- 104.3 KB
- flowchart5.4.2015.png
- 930×656
- 2015/05/04 20:20
- 104.5 KB
- galt200.jpg
- 143×150
- 2010/03/31 02:47
- 8.4 KB
- galt200b.jpg
- 112×150
- 2010/03/31 04:09
- 7.3 KB
- genomics_workshop_ucsc.pdf
- 2015/04/23 18:30
- 4.6 MB
- herbertlee.jpg
- 95×144
- 2010/04/07 01:50
- 24.9 KB
- hiseq_20mer.pdf
- 2015/04/17 22:01
- 7.7 KB
- hiseq_20mer_plot.pdf
- 2015/04/17 22:03
- 7.6 KB
- histogram_for_10_run.png
- 875×561
- 2015/05/12 04:23
- 18.2 KB
- histogram_for_ucsf_50_run.png
- 872×454
- 2015/05/12 04:24
- 16.8 KB
- histogram_of_contig_length_discovar_10_run.png
- 800×609
- 2015/05/09 02:57
- 19 KB
- histogram_of_contig_length_discovar_10_run_log_freq_.png
- 873×626
- 2015/05/09 04:14
- 20.5 KB
- histogram_of_contig_length_discovar_10_run_log_y_.png
- 883×630
- 2015/05/09 04:17
- 20.4 KB
- illumina-sequencing-v1.pdf
- 2015/04/17 22:31
- 1.4 MB
- img_9738.jpg
- 2592×1944
- 2010/03/30 03:35
- 2.9 MB
- img_9738r.jpg
- 1944×2592
- 2010/03/30 03:48
- 2.9 MB
- img_9794-240.jpg
- 240×180
- 2010/03/30 17:10
- 13.3 KB
- img_9795-240.jpg
- 240×180
- 2010/03/30 17:11
- 12.7 KB
- jeff200.jpg
- 122×150
- 2010/03/31 03:56
- 12.6 KB
- jeff200b.jpg
- 112×150
- 2010/03/31 04:11
- 11.6 KB
- jeff240x240.jpg
- 180×240
- 2010/03/30 04:08
- 33.5 KB
- john_kim.jpg
- 150×200
- 2010/04/07 17:13
- 52.1 KB
- johnstjohnhead.gif
- 150×200
- 2010/04/05 23:57
- 11 KB
- k-mers-v1.pdf
- 2015/04/20 17:17
- 800.4 KB
- kmergenie.dat.sw018_sw019_seqprep_merged.pdf
- 2015/05/14 02:24
- 4.4 KB
- kmergenie.dat.sw018_sw019_seqprep_merged.png
- 1050×1050
- 2015/05/14 02:26
- 67.2 KB
- kmergenie_output_adapter_trimming_only.pdf
- 2015/04/21 18:26
- 262.8 KB
- kmergenie_output_ec_adapter_trimming.pdf
- 2015/04/21 18:37
- 303.5 KB
- lucigen_insert_distribution.png
- 1034×473
- 2015/05/19 05:15
- 24.6 KB
- lucigen_insert_size_distribution.jpg
- 1257×509
- 2015/05/19 05:18
- 54.9 KB
- lucigen_mp_dupremoved_r1.pdf
- 2015/05/22 00:17
- 884 KB
- lucigen_mp_dupremoved_r2.pdf
- 2015/05/22 00:17
- 859.5 KB
- ma160-nxseq-long-mate-pair-library-kit.pdf
- 2015/04/16 22:52
- 1.9 MB
- merged_output.dat.pdf
- 2015/04/21 05:45
- 4.4 KB
- merged_output_final.dat.pdf
- 2015/04/21 18:11
- 4.4 KB
- merged_output_final.dat.png
- 1050×1050
- 2015/04/21 18:12
- 81.9 KB
- meyer_kircher.pdf
- 2015/04/10 18:39
- 11.8 MB
- michael200.jpg
- 121×150
- 2010/03/31 03:55
- 7.9 KB
- michael200b.jpg
- 113×150
- 2010/03/31 04:10
- 7.7 KB
- miseq_preqc_report.pdf
- 2015/04/10 21:33
- 196.2 KB
- pooled_hiseq_preqc_report.pdf
- 2015/04/15 16:27
- 169.5 KB
- pooleddatapreqcresults.pdf
- 2015/05/04 19:00
- 167.7 KB
- posterrorcorrectionkmerdist.png
- 650×596
- 2015/04/21 16:54
- 50 KB
- preqc_report_sw041.pdf
- 2015/05/13 06:15
- 540 KB
- preqc_report_sw042.pdf
- 2015/05/13 06:10
- 539.6 KB
- primer_design.pdf
- 2015/05/30 02:02
- 24.5 KB
- primer_design.rtf
- 2015/05/30 02:00
- 16.8 KB
- primer_design_location.pdf
- 2015/05/30 02:03
- 24.5 KB
- primer_design_locations.pdf
- 2015/06/02 03:19
- 24.9 KB
- r1_ijs8_mates_icc5_sw023...001.fastq_fastqc_report.pdf
- 2015/05/03 06:39
- 875.4 KB
- r1_ijs8_mates_icc5_sw023_s60_l001_r1_001.fastq.200_fastqc_report.pdf
- 2015/05/10 21:44
- 600.8 KB
- r2_ijs8_mates_icc5_sw023...001.fastq_fastqc_report.pdf
- 2015/05/03 06:39
- 861.4 KB
- r2_ijs8_mates_icc5_sw023_s60_l001_r2_001.fastq.200_fastqc_report.pdf
- 2015/05/10 21:50
- 582.8 KB
- rnagel.png
- 2525×1393
- 2015/05/08 00:22
- 1 MB
- rnaseq.pdf
- 2015/05/08 09:17
- 2.3 MB
- sam_150x200.png
- 150×200
- 2011/03/30 03:48
- 65.5 KB
- screen_shot_2015-05-08_at_7.47.39_pm.png
- 568×415
- 2015/05/09 02:49
- 14.4 KB
- screen_shot_2015-05-26_at_2.05.24_pm.png
- 1125×276
- 2015/05/26 23:37
- 133.2 KB
- secondbrowsershot.png
- 996×351
- 2015/05/15 19:14
- 87.1 KB
- selection_027.png
- 829×592
- 2015/05/08 17:08
- 58.8 KB
- seqlength.png
- 759×606
- 2015/05/12 15:46
- 58.7 KB
- sga_bme235_s15.pdf
- 2015/04/27 16:59
- 2.3 MB
- sgapreqcestgenomesize.png
- 370×312
- 2015/04/17 23:50
- 34.6 KB
- sgapreqcsimulatedcontig.png
- 378×320
- 2015/04/18 00:02
- 56.6 KB
- sgapreqcvarbranch.png
- 369×316
- 2015/04/18 00:02
- 43.1 KB
- shyamini200.jpg
- 140×150
- 2010/03/31 03:56
- 7.5 KB
- shyamini200b.jpg
- 113×150
- 2010/03/31 04:12
- 6.9 KB
- skewer_run2_sw042_1-pair1fastq.pdf
- 2015/05/29 19:18
- 1.4 MB
- skewer_run2_sw042_1-pair2fastq.pdf
- 2015/05/29 19:18
- 1.4 MB
- slug-164x200.jpg
- 164×200
- 2010/02/13 17:50
- 15.9 KB
- slug-dreaming-75x100.jpg
- 75×100
- 2010/06/03 00:13
- 24.3 KB
- slug-dreaming-300x400.jpg
- 300×400
- 2010/06/03 00:14
- 58.7 KB
- slug15a.png
- 846×562
- 2015/04/23 23:23
- 754.8 KB
- slug15b.png
- 845×563
- 2015/04/23 23:23
- 963.7 KB
- slug15c.png
- 729×515
- 2015/04/23 23:23
- 687.8 KB
- slug15d.png
- 379×447
- 2015/04/23 23:23
- 348.2 KB
- slug_mate_pair_presentation.pdf
- 2015/05/08 21:40
- 247.4 KB
- slugoutput.dat.pdf
- 2015/04/21 05:44
- 6.9 KB
- soap_workflow_updated.png
- 802×540
- 2015/05/24 19:29
- 93.6 KB
- soapassembly2_update.pptx.pdf
- 2015/05/13 17:49
- 1.3 MB
- sw018_adaptertrimmed_dup..._r1.pdf
- 2015/05/05 06:02
- 550.8 KB
- sw018_adaptertrimmed_dup..._r2.pdf
- 2015/05/05 06:02
- 556.6 KB
- sw018_s1_l007_r1_001.fastq.pdf
- 2015/04/14 15:05
- 597.5 KB
- sw018_s1_l007_r2_001.fastq.pdf
- 2015/04/14 15:07
- 627 KB
- sw018_sw019_adapter_seqprep.png
- 1050×1050
- 2015/05/14 02:33
- 71.2 KB
- sw018_tagttcc_l001_r1_001.fastq.pdf
- 2015/05/06 18:14
- 377.2 KB
- sw018_tagttcc_l001_r2_001.fastq.pdf
- 2015/05/06 18:14
- 386.9 KB
- sw019_adaptertrimmed_dup..._r1.pdf
- 2015/05/05 06:02
- 596 KB
- sw019_adaptertrimmed_dup..._r2.pdf
- 2015/05/05 06:02
- 599.9 KB
- sw019_s1_l001_r1_001.fastq_fastqc_report.pdf
- 2015/04/08 19:46
- 642.3 KB
- sw019_s1_l001_r2_001.fastq_fastqc_report.pdf
- 2015/04/08 19:45
- 668.1 KB
- sw019_s2_l008_r1_001.pdf
- 2015/04/15 20:11
- 380.2 KB
- sw019_s2_l008_r2_001.pdf
- 2015/04/15 20:11
- 379.9 KB
- sw019_tggcaat_l001_r1_001.fastq.pdf
- 2015/05/06 18:17
- 287.8 KB
- sw019_tggcaat_l001_r2_001.fastq.pdf
- 2015/05/06 18:17
- 303.1 KB
- sw041.r1.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:02
- 679.4 KB
- sw041.r2.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:03
- 684.7 KB
- sw041_adapter_trimmed_2-...ir1.pdf
- 2015/05/18 17:05
- 608.2 KB
- sw041_adapter_trimmed_2-...ir2.pdf
- 2015/05/18 17:05
- 599.2 KB
- sw041_insert_size_distribution.jpg
- 1256×510
- 2015/05/19 05:19
- 63.6 KB
- sw041_mates_vs_soap_run2_scaffolds.jpg
- 1019×523
- 2015/05/28 05:10
- 34.1 KB
- sw041_vs_soap_run1_scaffolds.jpg
- 1022×523
- 2015/05/28 05:10
- 48.2 KB
- sw041_vs_soap_scaffolds_attempt1.jpg
- 1019×471
- 2015/05/28 05:24
- 47.4 KB
- sw042.r1.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:08
- 651.1 KB
- sw042.r2.trimmed.fastq_fastqc_report.pdf
- 2015/05/12 03:08
- 663.3 KB
- sw042_insert_size_distribution.jpg
- 1258×512
- 2015/05/19 05:21
- 62 KB
- team_5_report_1.pdf
- 2015/04/29 21:35
- 4.7 MB
- trapnell_et_al._2010.pdf
- 2015/05/18 17:29
- 776.4 KB
- ucsf_bs-mk_preqc_report.pdf
- 2015/05/26 18:13
- 169.5 KB
- ucsf_bs-tag_preqc_report.pdf
- 2015/05/25 06:07
- 168.1 KB
- ucsf_new_lib_preqc_report.pdf
- 2015/05/20 03:33
- 169.8 KB
- ucsf_sw018_preqc_report.pdf
- 2015/05/24 06:40
- 166.6 KB
- ucsf_sw018_sw019_report.pdf
- 2015/05/13 01:39
- 406.2 KB
- ucsf_sw019_preqc_report.pdf
- 2015/05/25 05:59
- 167.5 KB
- undetermined_s0_l008_r1_001.pdf
- 2015/04/16 08:08
- 350.8 KB
archive/spring_2015_syllabus.txt · Last modified: 2015/10/21 18:46 by karplus
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
