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archive:spring_2015_syllabus [2015/05/24 12:29]
ed
archive:spring_2015_syllabus [2015/10/21 11:14]
karplus fixed name space for Ed's last lecture
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 Class meets M/W/F 9:30-10:40 in PSB 305 Class meets M/W/F 9:30-10:40 in PSB 305
  
-For a list of past/​present lecture notes please see the [[lecture notes]]+For a list of past/​present lecture notes please see the [[about_the_class:​lecture_notes]]
  
 | Number | Date | Topic | Lecturer | Lecture Notes | Note taker 1 | Note taker 2 | Slides | | Number | Date | Topic | Lecturer | Lecture Notes | Note taker 1 | Note taker 2 | Slides |
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 | 8  | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:​04-15-2015]] | Musselman-Brown | Cole | {{::​k-mers-v1.pdf| k-mer slides}}| | 8  | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:​04-15-2015]] | Musselman-Brown | Cole | {{::​k-mers-v1.pdf| k-mer slides}}|
 | 9  | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:​04-17-2015]] | Hussain |Cole | {{:​dbg-assembly-v1.pdf| DBG-assembly slides}}| | 9  | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:​04-17-2015]] | Hussain |Cole | {{:​dbg-assembly-v1.pdf| DBG-assembly slides}}|
-| 10  | 20 Apr | Team 1 report | Team 1 | [[lecture_notes:​04-20-2015]] | Chaves| Calef |{{bme_235_meraculous_report_1.pdf|Meraculous:​ Team 1 Report}}|+| 10  | 20 Apr | Team 1 report | Team 1 | [[lecture_notes:​04-20-2015]] | Chaves| Calef |{{:bme_235_meraculous_report_1.pdf|Meraculous:​ Team 1 Report}}|
 | 11  | 22 Apr | Team 2 report | Team 2 | [[lecture_notes:​04-22-2015]] | McGovern | Cole | {{:​lecture_notes:​soap_team2_report.pdf| SOAPdenovo: Team 2 Report}}| | 11  | 22 Apr | Team 2 report | Team 2 | [[lecture_notes:​04-22-2015]] | McGovern | Cole | {{:​lecture_notes:​soap_team2_report.pdf| SOAPdenovo: Team 2 Report}}|
 | 12  | 24 Apr | Team 3 report | Team 3 | [[lecture_notes:​04-24-2015]] | Richardson | Houser | {{:​sga_bme235_s15.pdf| SGA: Team 3 Report}}| | 12  | 24 Apr | Team 3 report | Team 3 | [[lecture_notes:​04-24-2015]] | Richardson | Houser | {{:​sga_bme235_s15.pdf| SGA: Team 3 Report}}|
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 | 24  | 22 May | Assembly of Repeat regions |  | [[lecture_notes:​05-22-2015]] | JaredC | Saremi | | 24  | 22 May | Assembly of Repeat regions |  | [[lecture_notes:​05-22-2015]] | JaredC | Saremi |
 | -  | 25 May | Holiday | N/A | N/A | N/A | N/A | | -  | 25 May | Holiday | N/A | N/A | N/A | N/A |
-| 25  | 27 May | Genome Annotation | Prost | [[lecture_notes:​05-27-2015]] | Kan| Feal|+| 25  | 27 May | Genome Annotation ​{{lecture_notes:​eukgeneannotation.pdf|Annotation Review paper}} ​| Prost | [[lecture_notes:​05-27-2015]] | Kan| Feal| {{::​annotation_workshop_ucsc.pdf}}|
 | 26  | 29 May |Jellyfish internals for kmer counting ​ | Karplus | [[lecture_notes:​05-29-2015]] | Kan| JaredC | | 26  | 29 May |Jellyfish internals for kmer counting ​ | Karplus | [[lecture_notes:​05-29-2015]] | Kan| JaredC |
 | 27  | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:​06-01-2015]] | JaredC | Markello | | 27  | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:​06-01-2015]] | JaredC | Markello |
-| 28  | 3 Jun |  |  | [[lecture_notes:​06-03-2015]] |Feal | Calef| +| 28  | 3 Jun | Presentation for donor & final analysis I |  | [[lecture_notes:​06-03-2015]] |Feal | Calef|  
-| 29  | 5 Jun | Final analysis II | Green | [[lecture_notes:​06-05-2015]] | JaredC | Dudek |+| 29  | 5 Jun | Presentation for donors & final analysis II | Green | [[lecture_notes:​06-05-2015]] | JaredC | Dudek | {{::​finalpresentation_bme235.pdf}} {{lecture_notes:​BS-het-v1.pptx}} | 
 +|
archive/spring_2015_syllabus.txt · Last modified: 2015/10/21 11:46 by karplus