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archive:spring_2015_syllabus [2015/05/18 17:34] gepoliano |
archive:spring_2015_syllabus [2015/06/09 19:17] thjmatthsoe |
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| 21 | 15 May | Team 3 report | Team 3 | [[lecture_notes:05-15-2015]] | Chaves| Calef | | | 21 | 15 May | Team 3 report | Team 3 | [[lecture_notes:05-15-2015]] | Chaves| Calef | | ||
| 22 | 18 May | Team 4 report | Team 4 | [[lecture_notes:05-18-2015]] | Musselman-Brown | McGovern| | | 22 | 18 May | Team 4 report | Team 4 | [[lecture_notes:05-18-2015]] | Musselman-Brown | McGovern| | ||
- | | 23 | 20 May | Team 5 report | Team 5 | [[lecture_notes:05-20-2015]] | jolespin | Saremi | | + | | 23 | 20 May | Team 5 report | Team 5 | [[lecture_notes:05-20-2015]] | jolespin | Saremi |{{:discovar_team_presentation_2.pdf|}} | |
- | | 24 | 22 May | | | [[lecture_notes:05-22-2015]] | JaredC | Saremi | | + | | 24 | 22 May | Assembly of Repeat regions | | [[lecture_notes:05-22-2015]] | JaredC | Saremi | |
| - | 25 May | Holiday | N/A | N/A | N/A | N/A | | | - | 25 May | Holiday | N/A | N/A | N/A | N/A | | ||
- | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| Feal| | + | | 25 | 27 May | Genome Annotation {{lecture_notes:eukgeneannotation.pdf|Annotation Review paper}} | Prost | [[lecture_notes:05-27-2015]] | Kan| Feal| {{::annotation_workshop_ucsc.pdf}}| |
| 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | | ||
| 27 | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | Markello | | | 27 | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | Markello | | ||
- | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] |Feal | Calef| | + | | 28 | 3 Jun | Presentation for donor & final analysis I | | [[lecture_notes:06-03-2015]] |Feal | Calef| |
- | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | Dudek | | + | | 29 | 5 Jun | Presentation for donors & final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | Dudek | {{::finalpresentation_bme235.pdf|}}| |