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archive:spring_2015_syllabus [2015/04/17 22:36] ceisenhart |
archive:spring_2015_syllabus [2015/04/20 17:19] ceisenhart Added Ed Green's slides |
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| 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Musselman-Brown |jolespin | | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Musselman-Brown |jolespin | | ||
| 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Hussain |Eisenhart | {{:illumina-sequencing-v1.pdf|Illumina slides}} | | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Hussain |Eisenhart | {{:illumina-sequencing-v1.pdf|Illumina slides}} | | ||
- | | 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole | k-mer-slides | | + | | 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole | {{::k-mers-v1.pdf| k-mer slides}}| |
- | | 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | DBG-assembly-slides | | + | | 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | {{:dbg-assembly-v1.pdf| DBG-assembly slides}}| |
| 10 | 20 Apr | Team 1 report | Team 1 | [[lecture_notes:04-20-2015]] | Chaves| | | | 10 | 20 Apr | Team 1 report | Team 1 | [[lecture_notes:04-20-2015]] | Chaves| | | ||
| 11 | 22 Apr | Team 2 report | Team 2 | [[lecture_notes:04-22-2015]] | | | | | 11 | 22 Apr | Team 2 report | Team 2 | [[lecture_notes:04-22-2015]] | | | | ||
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| 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | | ||
| 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | | ||
- | | 27 | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | | | + | | 27 | 1 Jun | Burrows-Wheeler transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | Markello | |
| 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | ||
| 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | | | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | | |