This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
archive:spring_2015_syllabus [2015/04/10 16:22] karplus Added Jellyfish lecture |
archive:spring_2015_syllabus [2015/04/10 17:15] sihussai |
||
---|---|---|---|
Line 8: | Line 8: | ||
| 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | | | 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | | ||
| 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | | 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | ||
- | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Hussain |jolespin | | + | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Musselman-Brown |jolespin | |
- | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Musselman-Brown |Eisenhart | | + | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Hussain |Eisenhart | |
| 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole| | | 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole| | ||
| 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | | | 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | | ||
Line 30: | Line 30: | ||
| 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | | ||
| 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| | | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| | | ||
- | | 27 | 1 Jun | | | [[lecture_notes:06-01-2015]] | | | | + | | 27 | 1 Jun | Burrows-Wheeler Transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | | | |
| 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | ||
| 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | | | | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | | | |