This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
archive:spring_2015_syllabus [2015/04/10 05:59] gepoliano |
archive:spring_2015_syllabus [2015/04/13 06:45] gepoliano |
||
---|---|---|---|
Line 8: | Line 8: | ||
| 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | | | 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | | ||
| 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | | 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | ||
- | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Hussain |jolespin | | + | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Musselman-Brown |jolespin | |
- | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Musselman-Brown |Eisenhart | | + | | 7 | 13 Apr | Illumina sequencing technology | Green | [[lecture_notes:04-13-2015]] | Hussain |Eisenhart | |
| 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole| | | 8 | 15 Apr | k-mer spectra analysis | Green | [[lecture_notes:04-15-2015]] | Musselman-Brown | Cole| | ||
| 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | | | 9 | 17 Apr | Genome assembly - theory and practice | Green | [[lecture_notes:04-17-2015]] | Hussain |Cole | | ||
- | | 10 | 20 Apr | Team 1 Report | Team 1 | [[lecture_notes:04-20-2015]] | | | | + | | 10 | 20 Apr | Team 1 Report | Team 1 | [[lecture_notes:04-20-2015]] | Chaves| | |
| 11 | 22 Apr | Team 2 Report | Team 2 | [[lecture_notes:04-22-2015]] | | | | | 11 | 22 Apr | Team 2 Report | Team 2 | [[lecture_notes:04-22-2015]] | | | | ||
- | | 12 | 24 Apr | Team 3 Report | Team 3 | [[lecture_notes:04-24-2015]] | | | | + | | 12 | 24 Apr | Team 3 Report | Team 3 | [[lecture_notes:04-24-2015]] | Chaves| | |
| 13 | 27 Apr | Team 4 Report | Team 4 | [[lecture_notes:04-26-2015]] | | | | | 13 | 27 Apr | Team 4 Report | Team 4 | [[lecture_notes:04-26-2015]] | | | | ||
| 14 | 29 Apr | Team 5 Report | Team 5 | [[lecture_notes:04-29-2015]] | | | | | 14 | 29 Apr | Team 5 Report | Team 5 | [[lecture_notes:04-29-2015]] | | | | ||
Line 23: | Line 23: | ||
| 19 | 11 May | Team 2 Report | Team 2 | [[lecture_notes:05-11-2015]] | | | | | 19 | 11 May | Team 2 Report | Team 2 | [[lecture_notes:05-11-2015]] | | | | ||
| 20 | 13 May | Team 3 Report | Team 3 | [[lecture_notes:05-13-2015]] | | | | | 20 | 13 May | Team 3 Report | Team 3 | [[lecture_notes:05-13-2015]] | | | | ||
- | | 21 | 15 May | Team 4 Report | Team 4 | [[lecture_notes:05-15-2015]] | | | | + | | 21 | 15 May | Team 4 Report | Team 4 | [[lecture_notes:05-15-2015]] | Chaves| | |
| 22 | 18 May | Team 5 Report | Team 5 | [[lecture_notes:05-18-2015]] | | | | | 22 | 18 May | Team 5 Report | Team 5 | [[lecture_notes:05-18-2015]] | | | | ||
| 23 | 20 May | | | [[lecture_notes:05-20-2015]] | Dudek | | | | 23 | 20 May | | | [[lecture_notes:05-20-2015]] | Dudek | | | ||
- | | 24 | 22 May | | | [[lecture_notes:05-22-2015]] | | | | + | | 24 | 22 May | | | [[lecture_notes:05-22-2015]] | JaredC | | |
| - | 25 May | Holiday | N/A | N/A | N/A | N/A | | | - | 25 May | Holiday | N/A | N/A | N/A | N/A | | ||
- | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | | | | + | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | |
- | | 26 | 29 May | | | [[lecture_notes:05-29-2015]] | | | | + | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| JaredC | |
- | | 27 | 1 Jun | | | [[lecture_notes:06-01-2015]] | | | | + | | 27 | 1 Jun | Burrows-Wheeler Transform (guts of most mappers) | Karplus | [[lecture_notes:06-01-2015]] | JaredC | | |
| 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | ||
- | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | | | | + | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | JaredC | | |