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archive:spring_2015_syllabus [2015/04/09 21:38] sihussai |
archive:spring_2015_syllabus [2015/04/10 16:24] karplus |
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| Number | Date | Topic | Lecturer | Lecture Notes | Note taker 1 | Note taker 2 | | | Number | Date | Topic | Lecturer | Lecture Notes | Note taker 1 | Note taker 2 | | ||
- | | 1 | 30 Mar | Course overview & introduction | Green/Karplus | [[lecture_notes:03-30-2015]] | Dudeck | Eisenhart | | + | | 1 | 30 Mar | Course overview & introduction | Green/Karplus | [[lecture_notes:03-30-2015]] | Dudek | Eisenhart | |
| 2 | 1 Apr | The Biology of the Banana Slug | Leonard / Pearse | [[lecture_notes:04-01-2015]] | Matthew | Saremi | | | 2 | 1 Apr | The Biology of the Banana Slug | Leonard / Pearse | [[lecture_notes:04-01-2015]] | Matthew | Saremi | | ||
| 3 | 3 Apr | Disection and Sequencing Libraries | Weber / Green | [[lecture_notes:04-03-2015]] | Richardson | Hussain | | | 3 | 3 Apr | Disection and Sequencing Libraries | Weber / Green | [[lecture_notes:04-03-2015]] | Richardson | Hussain | | ||
- | | 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | | | + | | 4 | 6 Apr | De novo genome assembly I | Prost | [[lecture_notes:04-06-2015]] | Kan | Chaves | |
| 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | | 5 | 8 Apr | De novo genome assemlby II | Prost | [[lecture_notes:04-08-2015]] | Hussain |jolespin | | ||
| 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Hussain |jolespin | | | 6 | 10 Apr | De novo genome assembly III | Prost | [[lecture_notes:04-10-2015]] | Hussain |jolespin | | ||
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| 13 | 27 Apr | Team 4 Report | Team 4 | [[lecture_notes:04-26-2015]] | | | | | 13 | 27 Apr | Team 4 Report | Team 4 | [[lecture_notes:04-26-2015]] | | | | ||
| 14 | 29 Apr | Team 5 Report | Team 5 | [[lecture_notes:04-29-2015]] | | | | | 14 | 29 Apr | Team 5 Report | Team 5 | [[lecture_notes:04-29-2015]] | | | | ||
- | | 15 | 1 May | Strategy Session | Green | [[lecture_notes:05-01-2015]] | Richardson | | | + | | 15 | 1 May | Strategy Session | Green | [[lecture_notes:05-01-2015]] | Richardson | Markello | |
| 16 | 4 May | Population Genetics / PSMC | Green | [[lecture_notes:05-04-2015]] | Musselman-Brown | Cole | | | 16 | 4 May | Population Genetics / PSMC | Green | [[lecture_notes:05-04-2015]] | Musselman-Brown | Cole | | ||
| 17 | 6 May | RNAseq | Green/? | [[lecture_notes:05-06-2015]] | Musselman-Brown | Richardson | | | 17 | 6 May | RNAseq | Green/? | [[lecture_notes:05-06-2015]] | Musselman-Brown | Richardson | | ||
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| 21 | 15 May | Team 4 Report | Team 4 | [[lecture_notes:05-15-2015]] | | | | | 21 | 15 May | Team 4 Report | Team 4 | [[lecture_notes:05-15-2015]] | | | | ||
| 22 | 18 May | Team 5 Report | Team 5 | [[lecture_notes:05-18-2015]] | | | | | 22 | 18 May | Team 5 Report | Team 5 | [[lecture_notes:05-18-2015]] | | | | ||
- | | 23 | 20 May | | | [[lecture_notes:05-20-2015]] | | | | + | | 23 | 20 May | | | [[lecture_notes:05-20-2015]] | Dudek | | |
| 24 | 22 May | | | [[lecture_notes:05-22-2015]] | | | | | 24 | 22 May | | | [[lecture_notes:05-22-2015]] | | | | ||
| - | 25 May | Holiday | N/A | N/A | N/A | N/A | | | - | 25 May | Holiday | N/A | N/A | N/A | N/A | | ||
- | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | | | | + | | 25 | 27 May | | | [[lecture_notes:05-27-2015]] | Kan| | |
- | | 26 | 29 May | | | [[lecture_notes:05-29-2015]] | | | | + | | 26 | 29 May |Jellyfish internals for kmer counting | Karplus | [[lecture_notes:05-29-2015]] | Kan| | |
- | | 27 | 1 Jun | | | [[lecture_notes:06-01-2015]] | | | | + | | 27 | 1 Jun | Burrows-Wheeler Transform (guts of most mappers) | | [[lecture_notes:06-01-2015]] | | | |
| 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | | 28 | 3 Jun | | | [[lecture_notes:06-03-2015]] | | | | ||
| 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | | | | | 29 | 5 Jun | Final analysis II | Green | [[lecture_notes:06-05-2015]] | | | |