archive:specific_task
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archive:specific_task [2015/05/27 16:56] jennie |
archive:specific_task [2015/08/04 03:32] (current) 68.180.228.52 ↷ Links adapted because of a move operation |
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| |Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
| + | |Install Maker| Houser | Complete | Maker is installed, see information [[archive:maker|here]] | | ||
| |Assemble repeat genome with RepArk|Team 1|In progress|Charles has started a test run using the original Hiseq and Miseq reads| | |Assemble repeat genome with RepArk|Team 1|In progress|Charles has started a test run using the original Hiseq and Miseq reads| | ||
| - | |Run gap closer on SOAP denovo assembly| | | Use SOAP denovo's external gap closer. Chose a reasonable name for new assembly. | | + | |Run GapCloser on SOAP denovo assembly|Charles|In progress| Use SOAP denovo's external gap closer. Chose a reasonable name for new assembly. | |
| - | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[jolespin_virus]]| | + | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[archive:jolespin_virus]]| |
| | Mate-pair adapter and linker removal| | | | | | Mate-pair adapter and linker removal| | | | | ||
| | Measuring insert size for each mate-pair library | unassigned | | | | | Measuring insert size for each mate-pair library | unassigned | | | | ||
| | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | ||
| - | | Blast long contigs and analyze results | Houser| | Check the browser for the 30 longest contigs from each group with contigs| | + | | Blast long contigs and analyze results | unassigned| | Check the browser for the 30 longest contigs from each group with contigs| |
| | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | ||
| | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | ||
archive/specific_task.1432745799.txt.gz · Last modified: 2015/05/27 16:56 by jennie
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