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archive:specific_task [2015/05/26 18:18] jennie |
archive:specific_task [2015/05/27 16:39] jennie |
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|Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
+ | |Run gap closer on SOAP denovo assembly| | | Use SOAP denovo's external gap closer. Chose a reasonable name for new assembly. | | ||
|Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[jolespin_virus]]| | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[jolespin_virus]]| | ||
| Mate-pair adapter and linker removal| | | | | | Mate-pair adapter and linker removal| | | | | ||
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| End trim SeqPrepped data | Hussain | | | | | End trim SeqPrepped data | Hussain | | | | ||
| Error correct SeqPrepped data | McGovern | waiting on previous step | | | | Error correct SeqPrepped data | McGovern | waiting on previous step | | | ||
- | | Error Correction new data| McGovern (Musket) & Richardson (BLESS/racer) | In progress | These programs have not yet been run succesfully... | | + | | Error Correction new data| McGovern (Musket) | In progress | | |
| Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | | Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | ||
| UCSC Genome browser hub | Eisenhart | Complete | https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | UCSC Genome browser hub | Eisenhart | Complete | https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | |