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archive:specific_task [2015/05/22 02:30] jolespin |
archive:specific_task [2015/05/26 17:03] jdhouser |
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|Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
- | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | [[jolespin]]| | + | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[jolespin_virus]]| |
| Mate-pair adapter and linker removal| | | | | | Mate-pair adapter and linker removal| | | | | ||
| Measuring insert size for each mate-pair library | unassigned | | | | | Measuring insert size for each mate-pair library | unassigned | | | | ||
| Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | ||
- | | Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | + | | Blast long contigs and analyze results | Houser| | Check the browser for the 30 longest contigs from each group with contigs| |
| Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | ||
| Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | |