archive:specific_task
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archive:specific_task [2015/05/18 17:42] nsaremi |
archive:specific_task [2015/05/26 18:15] jennie |
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| |Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
| - | | Mate-pair adapter and linker removal| | | | | + | |Find virus contigs and use PRICE to expand to full viruses | Cole,jolespin | | jolespin virus assembly progress can be accessed at [[jolespin_virus]]| |
| - | | Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | + | | Mate-pair adapter and linker removal| | | | |
| + | | Measuring insert size for each mate-pair library | unassigned | | | | ||
| + | | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | ||
| + | | Blast long contigs and analyze results | Houser| | Check the browser for the 30 longest contigs from each group with contigs| | ||
| | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | ||
| + | | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | ||
| | Plot contig size vs total genome size for assemblies | unassigned | | | | | Plot contig size vs total genome size for assemblies | unassigned | | | | ||
| | Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | | Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | ||
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| | Find cost of creating a tagmentase library| Dudek | | ~$50 | | | Find cost of creating a tagmentase library| Dudek | | ~$50 | | ||
| | Merge/trim new data (SeqPrep) | Hussain | Completed | See wiki page for each data set for details | | | Merge/trim new data (SeqPrep) | Hussain | Completed | See wiki page for each data set for details | | ||
| - | | Analyze new data (preqc) | Richardson | In progress | | | + | | Analyze new data (preqc) | Richardson | Completed | See wiki page for each data set for details | |
| | Error Correction new data| McGovern (Musket) & Richardson (BLESS/racer) | In progress | These programs have not yet been run succesfully... | | | Error Correction new data| McGovern (Musket) & Richardson (BLESS/racer) | In progress | These programs have not yet been run succesfully... | | ||
| | Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | | Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | ||
archive/specific_task.txt · Last modified: 2015/08/04 03:32 by 68.180.228.52
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