archive:specific_task
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archive:specific_task [2015/05/18 17:36] sihussai |
archive:specific_task [2015/05/19 04:37] chkcole |
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| |Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
| + | |Find virus contigs and use PRICE to expand to full viruses | Cole | | | | ||
| + | | Mate-pair adapter and linker removal| | | | | ||
| + | | Measuring insert size for each mate-pair library | unassigned | | | | ||
| + | | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | ||
| | Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | | Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | ||
| | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | ||
| + | | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | ||
| | Plot contig size vs total genome size for assemblies | unassigned | | | | | Plot contig size vs total genome size for assemblies | unassigned | | | | ||
| | Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | | Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | ||
archive/specific_task.txt · Last modified: 2015/08/04 03:32 by 68.180.228.52
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