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archive:specific_task [2015/05/18 17:35] sihussai |
archive:specific_task [2015/05/19 04:37] chkcole |
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|Task| Assignee | Status | Notes| | |Task| Assignee | Status | Notes| | ||
+ | |Find virus contigs and use PRICE to expand to full viruses | Cole | | | | ||
+ | | Mate-pair adapter and linker removal| | | | | ||
+ | | Measuring insert size for each mate-pair library | unassigned | | | | ||
+ | | Making Seqprep, adapter removed, end-trimmed library files | unassigned | | | | ||
| Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | | Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs| | ||
| Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | | Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser | | ||
+ | | Use PRICE to get mitochondrial genome as single contig | Natasha Dudek? | | | | ||
| Plot contig size vs total genome size for assemblies | unassigned | | | | | Plot contig size vs total genome size for assemblies | unassigned | | | | ||
| Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | | Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | ||
- | | Fastqc on SeqPrepped data | unassigned | waiting on previous steps | | | + | | Fastqc/kmergenie on SeqPrepped data | unassigned | waiting on previous steps | | |
| End trim SeqPrepped data | Hussain | | | | | End trim SeqPrepped data | Hussain | | | | ||
| Error correct SeqPrepped data | McGovern | waiting on previous step | | | | Error correct SeqPrepped data | McGovern | waiting on previous step | | |