Differences

This shows you the differences between two versions of the page.

--- archive:specific_task [2015/05/15 22:14]
charles
+++ archive:specific_task [2015/05/16 02:19]
ceisenhart
@@ Line 3: / Line 3: @@
 |Task| Assignee | Status | Notes|
-| Plot contig size vs total genome size for assemblies | | | |
+| Blast long contigs and analyze results | unassigned | | Check the browser for the 30 longest contigs from each group with contigs|
-| Ask UCSF about the discrepancy in the numbers of reads | | | I don't see any discrepancy in the number of reads, perhaps this can be removed?  |
+| Find genes in the mitochondrial genome | unassigned | | The genome is on the browser, find it here https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser |
+| Plot contig size vs total genome size for assemblies | unassigned | | |
+| Ask UCSF about the discrepancy in the numbers of reads | unassigned | | I don't see any discrepancy in the number of reads, perhaps this can be removed?  |
 | Analyze SeqPrep results | | | |
-| UCSC Genome browser hub | Eisenhart | Complete | Discovar De novo and SOAP have data up, very early phase, make a custom hub with this link, http://hgwdev-ceisenhart.cse.ucsc.edu/~ceisenhart/hubs/bananaSlug/hub.txt |
+| UCSC Genome browser hub | Eisenhart | Complete | https://banana-slug.soe.ucsc.edu/banana_slug_genome_browser |
 | Plot contig size histogram for current assembly (SOAPdenovo2 results) | Markello | Complete | |
 | Plot scaffold size histogram for current assembly (SOAPdenovo2 results) | Markello | Complete | |

Banana Slug Genomics