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archive:specific_task [2015/05/13 05:00] ndudek |
archive:specific_task [2015/05/13 18:03] sihussai |
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| Ask UCSF about the discrepancy in the numbers of reads | | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | | Ask UCSF about the discrepancy in the numbers of reads | | | I don't see any discrepancy in the number of reads, perhaps this can be removed? | | ||
| Analyze SeqPrep results | | | | | | Analyze SeqPrep results | | | | | ||
- | | Preqc on new mate pair SW041 SW042| Saremi | In progress | | | ||
| Plot contig size histogram for current assembly (SOAPdenovo2 results) | Markello | In progress | | | | Plot contig size histogram for current assembly (SOAPdenovo2 results) | Markello | In progress | | | ||
| Plot scaffold size histogram for current assembly (SOAPdenovo2 results) | Markello | In progress | | | | Plot scaffold size histogram for current assembly (SOAPdenovo2 results) | Markello | In progress | | | ||
| Find cost of creating a tagmentase library| Dudek | | ~$50 | | | Find cost of creating a tagmentase library| Dudek | | ~$50 | | ||
- | | Merge/trim new data (SeqPrep) | Hussain | in progress | | | + | | Merge/trim new data (SeqPrep) | Hussain | Completed | See wiki page for each data set for details | |
| Analyze new data (preqc) | Richardson | In progress | | | | Analyze new data (preqc) | Richardson | In progress | | | ||
| Error Correction new data| McGovern (Musket) & Richardson (BLESS/racer) | In progress | These programs have not yet been run succesfully... | | | Error Correction new data| McGovern (Musket) & Richardson (BLESS/racer) | In progress | These programs have not yet been run succesfully... | | ||
| Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | | Install bowtie | Chaves | In progress |/campusdata/gchaves/Bowtie/bowtie2-2.2.5 (Not yet running successfully)| | ||
+ | | Preqc on new mate pair SW041 SW042| Saremi | Completed | | | ||
| Update the wiki to include mate pair meta data | Eisenhart | completed | | | Update the wiki to include mate pair meta data | Eisenhart | completed | | ||
| Install CEGMA dependencies | Markello | In progress | Relying on IT to fix issues with completing compilation of wise2 (genewise) package which CEGMA requires | | | Install CEGMA dependencies | Markello | In progress | Relying on IT to fix issues with completing compilation of wise2 (genewise) package which CEGMA requires | |