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archive:jolespin_virus [2015/05/22 02:56]
jolespin
archive:jolespin_virus [2015/07/18 20:33] (current)
ceisenhart ↷ Page moved from jolespin_virus to archive:jolespin_virus
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 </​code>​ </​code>​
 I ran this in BLASTp and it mapped to different parovirus NS1 proteins: I ran this in BLASTp and it mapped to different parovirus NS1 proteins:
-<​code>​ +| Alignment | Max Score | Total Score | Query Coverage ​| e-value ​| Identity | Accession |  
-| Alignment | Max Score | Total Score | Query Coverage | Identity | Accession |  +|NS1 [Raccoon dog amdo ]|60.1|60.1|17%|7e-06|28%|AID57418.1|
-|NS1 [Raccoon dog amdo ]|60.1|60.1|17%|7e-06|28%|AID57418.1|ACA28962.1|+
 |nonstructural protein [Turkey parvo  1078]|57.4|57.4|17%|6e-05|28%|ACA28962.1| |nonstructural protein [Turkey parvo  1078]|57.4|57.4|17%|6e-05|28%|ACA28962.1|
 |NS1 [Chicken parvo ]|57.0|57.0|17%|7e-05|28%|AJB28744.1| |NS1 [Chicken parvo ]|57.0|57.0|17%|7e-05|28%|AJB28744.1|
-</​code>​+
 I chose to look at ACA28962.1. ​ Region 360:519 of my input sequence mapped with high probability this protein (the others as well). ​ The sequence for this is: I chose to look at ACA28962.1. ​ Region 360:519 of my input sequence mapped with high probability this protein (the others as well). ​ The sequence for this is:
 <​code>​ <​code>​
archive/jolespin_virus.1432263393.txt.gz · Last modified: 2015/05/22 02:56 by jolespin