archive:jolespin_virus
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archive:jolespin_virus [2015/05/22 02:56] jolespin |
archive:jolespin_virus [2015/05/22 02:59] jolespin |
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| I ran this in BLASTp and it mapped to different parovirus NS1 proteins: | I ran this in BLASTp and it mapped to different parovirus NS1 proteins: | ||
| - | <code> | + | | Alignment | Max Score | Total Score | Query Coverage | e-value | Identity | Accession | |
| - | | Alignment | Max Score | Total Score | Query Coverage | Identity | Accession | | + | |NS1 [Raccoon dog amdo ]|60.1|60.1|17%|7e-06|28%|AID57418.1| |
| - | |NS1 [Raccoon dog amdo ]|60.1|60.1|17%|7e-06|28%|AID57418.1|ACA28962.1| | + | |
| |nonstructural protein [Turkey parvo 1078]|57.4|57.4|17%|6e-05|28%|ACA28962.1| | |nonstructural protein [Turkey parvo 1078]|57.4|57.4|17%|6e-05|28%|ACA28962.1| | ||
| |NS1 [Chicken parvo ]|57.0|57.0|17%|7e-05|28%|AJB28744.1| | |NS1 [Chicken parvo ]|57.0|57.0|17%|7e-05|28%|AJB28744.1| | ||
| - | </code> | + | |
| I chose to look at ACA28962.1. Region 360:519 of my input sequence mapped with high probability this protein (the others as well). The sequence for this is: | I chose to look at ACA28962.1. Region 360:519 of my input sequence mapped with high probability this protein (the others as well). The sequence for this is: | ||
| <code> | <code> | ||
archive/jolespin_virus.txt · Last modified: 2015/07/18 20:33 by ceisenhart
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