Differences

This shows you the differences between two versions of the page.

--- archive:computer_resources:campusrocks [2015/04/18 20:31]
charles [Sungrid Job scheduler]
+++ archive:computer_resources:campusrocks [2015/04/18 20:57]
charles [Sungrid Job scheduler]
@@ Line 99: / Line 99: @@
 #$ -q [Name of specific server queue]\\
 Used to specify which set of servers you would like the sungrid scheduler to schedule/run your jobs in. Names on campus rocks include 'all.q' and 'small.q'
+Example qsub commands:
+  * qsub -N skewer_adapter_removal -cwd -V -pe mpi 20 -l mem_free=50g /campusdata/BME235/S15_assemblies/SOAPdenovo2/adapterRemovalTask/skewer_run/run_skewer_adapter_removal.sh
+Useful commands for viewing currently run jobs:
+#$ qhost\\
+Displays the compute nodes available on the cluster including hardware statistics.
+#$ qstat\\
+Displays the status of the jobs submitted to qsub.\\
+  *flag '-f' displays more hardware usage information on each node. The 'resv/used/tot.' column displays number of processing cores reserved, used, and the total number of cores for a node respectively.
+Primary job status codes:
+  *'r' status indicates that a job is running.
+  *'qw' status indicates that a job is waiting to be scheduled/run on a machine.

Banana Slug Genomics