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--- archive:computer_resources:campusrocks [2010/04/08 02:32]
jstjohn
+++ archive:computer_resources:campusrocks [2010/04/16 01:27]
galt
@@ Line 24: / Line 24: @@
   * OS: GNU/Linux 2.6.18-128.1.14.el5xen
-===== Directory structure =====
+===== Sungrid Job scheduler =====
-  * Root: /campusdata/BME235
-  * [[bin|bin]]
+Campusrocks uses sungrid for scheduling jobs.  The techstaff request that jobs only be run
-  * [[bin/x86_64|bin/x86_64]]
+on the compute nodes, not the head node, as jobs run there slow down the entire cluster.
-  * [[bin/scripts|bin/scripts]]
+They threaten to kill jobs found running on the head node.
-  * [[/data|data]]
-  * [[/programs|programs]]
+There is [[http://campusrocks.soe.ucsc.edu/roll-documentation/sge/5.2/|Online documentation]] of how to use sungrid to submit jobs on the cluster.  The main commands are
-  * [[lib|lib]] (renamed from libs to lib to simplify install process so you can install most programs with --prefix=/campusdata/BME235) --- //[[jstjohn@soe.ucsc.edu|John St. John]] 2010/04/06 23:56//
+  * qsub: Submits a job (create a shell script, then run "qsub -cwd shellscript")
-  * [[include|include]] (currently contains boost headers)
+  * qdel: Delete a job
-  * [[experiments|experiments]]
+  * qlogin: Interactive login
+  * qstat: See the status of jobs in the queue
+  * qmon: Graphical User Interface (GUI)
+The web site is locked so that it can only be accessed oncampus.

Banana Slug Genomics