This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
archive:computer_resources:campusrocks [2010/04/07 06:57] jstjohn |
archive:computer_resources:campusrocks [2010/04/11 16:37] karplus paraphrased sungrid info from campusrocks login message |
||
---|---|---|---|
Line 26: | Line 26: | ||
===== Directory structure ===== | ===== Directory structure ===== | ||
* Root: /campusdata/BME235 | * Root: /campusdata/BME235 | ||
- | * [[/bin|/bin]] | + | * [[bin|bin]] |
- | * [[/bin/x86_64|/bin/x86_64]] | + | * [[bin/x86_64|bin/x86_64]] |
- | * [[/bin/scripts|/bin/scripts]] | + | * [[bin/scripts|bin/scripts]] |
- | * [[/data|/data]] | + | * [[/data|data]] |
- | * [[/programs|/programs]] | + | * [[/programs|programs]] |
- | * [[/lib|/lib]] (renamed from libs to lib to simplify install process so you can install most programs with --prefix=/campusdata/BME235) --- //[[jstjohn@soe.ucsc.edu|John St. John]] 2010/04/06 23:56// | + | * [[lib|lib]] (renamed from libs to lib to simplify install process so you can install most programs with --prefix=/campusdata/BME235) --- //[[jstjohn@soe.ucsc.edu|John St. John]] 2010/04/06 23:56// |
- | * [[/include|/include]] (currently contains boost headers) | + | * [[include|include]] (currently contains boost headers) |
- | * [[/experiments|/experiments]] | + | * [[experiments|experiments]] |
+ | |||
+ | ===== Sungrid Job scheduler ===== | ||
+ | |||
+ | Campusrocks uses sungrid for scheduling jobs. The techstaff request that jobs only be run | ||
+ | on the compute nodes, not the head node, as jobs run there slow down the entire cluster. | ||
+ | They threaten to kill jobs found running on the head node. | ||
+ | |||
+ | There is [[http://campusrocks.soe.ucsc.edu/roll-documentation/sge/5.2/|Online documentation]] of how to use sungrid to submit jobs on the cluster. The main commands are | ||
+ | * qsub: Submits a job (create a shell script, then run "qsub shellscript") | ||
+ | * qdel: Delete a job | ||
+ | * qlogin: Interactive login | ||
+ | * qstat: See the status of jobs in the queue | ||
+ | * qmon: Graphical User Interface (GUI) | ||
+ | |||
+ | The web site is locked so that it can only be accessed oncampus. | ||
+ | |||
+ |