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archive:computer_resources:campusrocks [2010/03/31 22:15] juettemann |
archive:computer_resources:campusrocks [2010/04/11 16:37] karplus paraphrased sungrid info from campusrocks login message |
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'' | '' | ||
- | ==== Account/Documentation ==== | + | ===== Account/Documentation ===== |
* [[Creating an account|Create a new account]] | * [[Creating an account|Create a new account]] | ||
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* OS: GNU/Linux 2.6.18-128.1.14.el5xen | * OS: GNU/Linux 2.6.18-128.1.14.el5xen | ||
| | ||
- | | + | ===== Directory structure ===== |
+ | * Root: /campusdata/BME235 | ||
+ | * [[bin|bin]] | ||
+ | * [[bin/x86_64|bin/x86_64]] | ||
+ | * [[bin/scripts|bin/scripts]] | ||
+ | * [[/data|data]] | ||
+ | * [[/programs|programs]] | ||
+ | * [[lib|lib]] (renamed from libs to lib to simplify install process so you can install most programs with --prefix=/campusdata/BME235) --- //[[jstjohn@soe.ucsc.edu|John St. John]] 2010/04/06 23:56// | ||
+ | * [[include|include]] (currently contains boost headers) | ||
+ | * [[experiments|experiments]] | ||
+ | |||
+ | ===== Sungrid Job scheduler ===== | ||
+ | |||
+ | Campusrocks uses sungrid for scheduling jobs. The techstaff request that jobs only be run | ||
+ | on the compute nodes, not the head node, as jobs run there slow down the entire cluster. | ||
+ | They threaten to kill jobs found running on the head node. | ||
+ | |||
+ | There is [[http://campusrocks.soe.ucsc.edu/roll-documentation/sge/5.2/|Online documentation]] of how to use sungrid to submit jobs on the cluster. The main commands are | ||
+ | * qsub: Submits a job (create a shell script, then run "qsub shellscript") | ||
+ | * qdel: Delete a job | ||
+ | * qlogin: Interactive login | ||
+ | * qstat: See the status of jobs in the queue | ||
+ | * qmon: Graphical User Interface (GUI) | ||
+ | |||
+ | The web site is locked so that it can only be accessed oncampus. | ||
+ | |||
+ |