archive:computer_resources:campusrocks
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
archive:computer_resources:campusrocks [2010/03/30 15:42] juettemann |
archive:computer_resources:campusrocks [2010/04/16 03:40] galt |
||
|---|---|---|---|
| Line 7: | Line 7: | ||
| Address: 128.114.48.114 | Address: 128.114.48.114 | ||
| '' | '' | ||
| - | ===== Creating an account ===== | ||
| - | Visit https://vpn.soe.ucsc.edu/ and follow the instructions on the page to reset your password for your UCSC account (//username//@ucsc.edu). | + | ===== Account/Documentation ===== |
| - | After the password is (re)set, you should be able to | + | |
| - | <code> | + | |
| - | ssh username@campusrocks.cse.ucsc.edu | + | |
| - | </code> | + | |
| - | At your first login, a public/private keypair is generated. Some information about public key authentication can be found [[http://sial.org/howto/openssh/publickey-auth/|here]]. | + | * [[Creating an account|Create a new account]] |
| + | * [[http://campusrocks.soe.ucsc.edu/roll-documentation/sge/5.2/|Documentation]] (works only on campus or when connected via [[http://vpn.soe.ucsc.edu |VPN]].) | ||
| + | * [[http://campusrocks.soe.ucsc.edu/ganglia/|Status page]] | ||
| + | * [[Installed Software|Software]] | ||
| - | There is a documentation but is offline at the moment (Apache seems to be down). I will put a link here as soon as it is available again. | ||
| Line 27: | Line 24: | ||
| * OS: GNU/Linux 2.6.18-128.1.14.el5xen | * OS: GNU/Linux 2.6.18-128.1.14.el5xen | ||
| | | ||
| - | * GCC: | + | ===== Sungrid Job scheduler ===== |
| - | * gcc-4.1.2-44.el5 | + | |
| - | * gcc-gfortran-4.1.2-44.el5 | + | Campusrocks uses sungrid for scheduling jobs. The techstaff request that jobs only be run |
| - | * libgcc-4.1.2-44.el5 | + | on the compute nodes, not the head node, as jobs run there slow down the entire cluster. |
| - | * libgcc-4.1.2-44.el5 | + | They threaten to kill jobs found running on the head node. |
| - | * gcc-c++-4.1.2-44.el5 | + | |
| - | + | There is [[http://campusrocks.soe.ucsc.edu/roll-documentation/sge/5.2/|Online documentation]] of how to use sungrid to submit jobs on the cluster. The main commands are | |
| - | * Perl 2.8.8: | + | * qsub: Submits a job (create a shell script, then run "qsub -cwd shellscript") |
| - | * foundation-perl-XML-Parser-2.36-1 | + | * qdel: Delete a job |
| - | * foundation-perl-Text-Iconv-1.7-1 | + | * qlogin: Interactive login |
| - | * foundation-perl-SVG-Graph-0.02-1 | + | * qstat: See the status of jobs in the queue |
| - | * foundation-perl-HTML-Parser-3.60-1 | + | * qmon: Graphical User Interface (GUI) |
| - | * foundation-perl-XML-DOM-1.44-1 | + | |
| - | * foundation-perl-GD-SVG-0.33-1 | + | The web site is locked so that it can only be accessed oncampus. |
| - | * foundation-perl-IO-stringy-2.110-1 | + | |
| - | * foundation-perl-Text-Shellwords-1.08-1 | + | [[http://web.njit.edu/topics/HPC/basement/sge/SGE.html|SunGrid Quick Start]] |
| - | * foundation-perl-URI-1.38-1 | + | |
| - | * foundation-perl-SVG-2.49-1 | + | |
| - | * foundation-perl-XML-Quote-1.02-1 | + | |
| - | * foundation-perl-libxml-perl-0.08-1 | + | |
| - | * perl-5.8.8-18.el5_3.1 | + | |
| - | * perl-SGMLSpm-1.03ii-16.2.1 | + | |
| - | * foundation-perl-XML-Writer-0.606-1 | + | |
| - | * foundation-perl-Data-Stag-0.11-1 | + | |
| - | * foundation-perl-XML-Node-0.11-1 | + | |
| - | * foundation-perl-bioperl-ext-1.5-1 | + | |
| - | * ImageMagick-perl-6.2.8.0-4.el5_1.1 | + | |
| - | * foundation-perl-5.8.8-0 | + | |
| - | * perl-DBI-1.52-2.el5 | + | |
| - | * foundation-perl-IO-String-1.08-1 | + | |
| - | * foundation-perl-Graph-0.91-1 | + | |
| - | * perl-String-CRC32-1.4-2.fc6 | + | |
| - | * foundation-perl-Storable-2.20-1 | + | |
| - | * foundation-perl-Scalar-List-Utils-1.21-1 | + | |
| - | * foundation-perl-HTML-Tagset-3.20-1 | + | |
| - | * foundation-perl-libwww-perl-5.826-1 | + | |
| - | * foundation-perl-XML-Twig-3.32-1 | + | |
| - | * foundation-perl-File-Temp-0.21-1 | + | |
| - | * foundation-perl-bioperl-1.6.0-1 | + | |
| - | * foundation-perl-bioperl-db-0.01-1 | + | |
| - | * foundation-perl-GD-2.41-1 | + | |
| - | * foundation-perl-PathTools-3.30-1 | + | |
| - | * foundation-perl-Digest-MD5-2.38-1 | + | |
| - | * perl-XML-Parser-2.34-6.1.2.2.1 | + | |
| - | * foundation-perl-libnet-1.22-1 | + | |
| - | * foundation-perl-bioperl-gui-1.0-1 | + | |
| - | * foundation-perl-MIME-Base64-3.07-1 | + | |
| - | * foundation-perl-tk-804.027-0 | + | |
| - | * perl-DBD-MySQL-3.0007-2.el5 | + | |
| - | * foundation-perl-SOAP-Lite-0.710.08-1 | + | |
| - | * foundation-perl-Module-Build-0.33-1 | + | |
| - | * foundation-perl-bioperl-run-1.4-1 | + | |
| - | * perl-X11-Protocol-0.56-1.el5.rf | + | |
| - | + | ||
| - | * Python 2.4: | + | |
| - | * python-elementtree-1.2.6-5 | + | |
| - | * MySQL-python-1.2.1-1 | + | |
| - | * ganglia-python-5.2-1 | + | |
| - | * python-pyblock-0.26-3.el5 | + | |
| - | * gnome-python2-gnomekeyring-2.16.0-2.el5 | + | |
| - | * libxml2-python-2.6.26-2.1.2.7 | + | |
| - | * gamin-python-0.1.7-8.el5 | + | |
| - | * rpm-python-4.4.2.3-9.el5 | + | |
| - | * gnome-python2-applet-2.16.0-2.el5 | + | |
| - | * gnome-python2-libegg-2.14.2-6.el5 | + | |
| - | * foundation-python-2.4.2-0 | + | |
| - | * notify-python-0.1.0-3.fc6 | + | |
| - | * python-numeric-23.7-2.2.2 | + | |
| - | * foundation-python-extras-5.2-0 | + | |
| - | * python-urlgrabber-3.1.0-5.el5 | + | |
| - | * gnome-python2-gconf-2.16.0-1.fc6 | + | |
| - | * gnome-python2-canvas-2.16.0-1.fc6 | + | |
| - | * gnome-python2-gnomeprint-2.16.0-2.el5 | + | |
| - | * python-2.4.3-24.el5 | + | |
| - | * dbus-python-0.70-7.el5 | + | |
| - | * gtk-vnc-python-0.3.2-3.el5 | + | |
| - | * libselinux-python-1.33.4-5.1.el5 | + | |
| - | * python-sqlite-1.1.7-1.2.1 | + | |
| - | * foundation-python-xml-0.8.4-0 | + | |
| - | * python-devel-2.4.3-24.el5 | + | |
| - | * python-virtinst-0.300.2-12.el5 | + | |
| - | * gnome-python2-bonobo-2.16.0-1.fc6 | + | |
| - | * gnome-python2-desktop-2.16.0-2.el5 | + | |
| - | * gnome-python2-gtksourceview-2.16.0-2.el5 | + | |
| - | * libvirt-python-0.3.3-14.el5_3.1 | + | |
| - | * gnome-python2-gnomevfs-2.16.0-1.fc6 | + | |
| - | * gnome-python2-extras-2.14.2-6.el5 | + | |
| - | * biopython-1.50-1 | + | |
| - | * python-iniparse-0.2.3-4.el5 | + | |
| - | * python-devel-2.4.3-24.el5 | + | |
| - | * python-ldap-2.2.0-2.1 | + | |
| - | * audit-libs-python-1.7.7-6.el5_3.3 | + | |
| - | * libbdevid-python-5.1.19.6-44.1 | + | |
| - | * gnome-python2-2.16.0-1.fc6 | + | |
| - | * MySQL 5.8.8 | ||
archive/computer_resources/campusrocks.txt · Last modified: 2015/09/02 16:42 by ceisenhart
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
