archive:computer_resources:assemblies
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision | Next revision Both sides next revision | ||
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archive:computer_resources:assemblies [2011/06/07 23:16] karplus [slug/] added abyss assembly info to barcode-of-life |
archive:computer_resources:assemblies [2011/06/08 05:59] karplus [slug/] fixed bullets in SOAPdenovo assembly 1 |
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| * so ran with filling -R to get 12k maxcontig. | * so ran with filling -R to get 12k maxcontig. | ||
| * Then ran the scaffolding steps with 200bp insert size. | * Then ran the scaffolding steps with 200bp insert size. | ||
| - | * For all steps, used low default cutoffs since our 10x coverage | + | * For all steps, used low default cutoffs since our 10x coverage is not high. 21k max scaffold size. |
| - | * is not high. 21k max scaffold size. Estimated | + | * Estimated genome size is around 3G. |
| - | * genome size is around 3G. The 4 steps are | + | * The 4 steps are |
| - pregraph (3.5 to 4.5 hours for 30 to 60 cpus) | - pregraph (3.5 to 4.5 hours for 30 to 60 cpus) | ||
| - contig (1.3 hours) | - contig (1.3 hours) | ||
archive/computer_resources/assemblies.txt · Last modified: 2015/09/02 16:53 by 92.247.181.31
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