This shows you the differences between two versions of the page.
Both sides previous revision Previous revision | Next revision Both sides next revision | ||
archive:computer_resources:assemblies [2011/06/03 21:37] eyliaw [slug/] |
archive:computer_resources:assemblies [2011/06/03 21:43] eyliaw [slug/] |
||
---|---|---|---|
Line 131: | Line 131: | ||
* Statistics for each kmer size assembly (using illumina and 454 data, using both for contig and scaffolding): | * Statistics for each kmer size assembly (using illumina and 454 data, using both for contig and scaffolding): | ||
* k31: | * k31: | ||
- | 1298372 scaffolds from 4814226 contigs sum up 632702276bp, with average length 487, 0 gaps filled | + | * 1298372 scaffolds from 4814226 contigs sum up 632702276bp, with average length 487, 0 gaps filled |
- | 3611844 scaffolds&singleton sum up 1133413022bp, with average length 313 | + | * 3611844 scaffolds&singleton sum up 1133413022bp, with average length 313 |
- | the longest is 10340bp,scaffold N50 is 442 bp, scaffold N90 is 148 bp | + | * the longest is 10340bp,scaffold N50 is 442 bp, scaffold N90 is 148 bp |
* k47: | * k47: | ||
- | 871819 scaffolds from 5306463 contigs sum up 530762874bp, with average length 608, 0 gaps filled | + | * 871819 scaffolds from 5306463 contigs sum up 530762874bp, with average length 608, 0 gaps filled |
- | 4203195 scaffolds&singleton sum up 1296678043bp, with average length 308 | + | * 4203195 scaffolds&singleton sum up 1296678043bp, with average length 308 |
- | the longest is 14750bp,scaffold N50 is 458 bp, scaffold N90 is 140 bp | + | * the longest is 14750bp,scaffold N50 is 458 bp, scaffold N90 is 140 bp |
* k63: | * k63: | ||
- | 270887 scaffolds from 4022505 contigs sum up 139720415bp, with average length 515, 0 gaps filled | + | * 270887 scaffolds from 4022505 contigs sum up 139720415bp, with average length 515, 0 gaps filled |
- | 3710532 scaffolds&singleton sum up 690332560bp, with average length 186 | + | * 3710532 scaffolds&singleton sum up 690332560bp, with average length 186 |
- | the longest is 14897bp,scaffold N50 is 232 bp, scaffold N90 is 112 bp | + | * the longest is 14897bp,scaffold N50 is 232 bp, scaffold N90 is 112 bp |