archive:computer_resources:assemblies
Differences
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archive:computer_resources:assemblies [2011/06/03 15:40] karplus [slug/] added more on mitochondrion assembly |
archive:computer_resources:assemblies [2011/06/03 22:12] eyliaw [slug/] |
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| - scaff: | - scaff: | ||
| * intra-scaffold gap closure on (-F) | * intra-scaffold gap closure on (-F) | ||
| + | * Statistics for each kmer size assembly (using illumina and 454 data, using both for contig and scaffolding): | ||
| + | * k31: | ||
| + | * 1,298,372 scaffolds from 4,814,226 contigs sum up 632,702,276bp, with average length 487, 0 gaps filled | ||
| + | * 3,611,844 scaffolds&singleton sum up 1,133,413,022bp, with average length 313 | ||
| + | * the longest is 10,340bp,scaffold N50 is 442 bp, scaffold N90 is 148 bp | ||
| + | * k47: | ||
| + | * 871,819 scaffolds from 5,306,463 contigs sum up 530,762,874bp, with average length 608, 0 gaps filled | ||
| + | * 4,203,195 scaffolds&singleton sum up 1,296,678,043bp, with average length 308 | ||
| + | * the longest is 14,750bp,scaffold N50 is 458 bp, scaffold N90 is 140 bp | ||
| + | * k63: | ||
| + | * 270,887 scaffolds from 4,022,505 contigs sum up 139,720,415bp, with average length 515, 0 gaps filled | ||
| + | * 3,710,532 scaffolds&singleton sum up 690,332,560bp, with average length 186 | ||
| + | * the longest is 14,897bp,scaffold N50 is 232 bp, scaffold N90 is 112 bp | ||
| + | |||
archive/computer_resources/assemblies.txt · Last modified: 2015/09/02 16:53 by 92.247.181.31
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