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archive:computer_resources:assemblies [2011/06/02 19:26] eyliaw |
archive:computer_resources:assemblies [2011/06/02 19:27] eyliaw [slug/] |
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* Runs with k27, 31, 47, and 63 so far. 47 was the best overall. 63 got the longest contig (~14.9kb). | * Runs with k27, 31, 47, and 63 so far. 47 was the best overall. 63 got the longest contig (~14.9kb). | ||
* Run parameters: | * Run parameters: | ||
- | * pregraph: | + | - pregraph: |
- | - lowest count size of 2 (-d 2) | + | * lowest count size of 2 (-d 2) |
- | * contig: | + | - contig: |
- | - solve tiny repeats on (-R) | + | * solve tiny repeats on (-R) |
- | * map: | + | - map: |
- | - all default | + | * all default |
- | * scaff: | + | - scaff: |
- | - intra-scaffold gap closure on (-F) | + | * intra-scaffold gap closure on (-F) |