archive:computer_resources:assemblies
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archive:computer_resources:assemblies [2010/05/19 20:48] galt |
archive:computer_resources:assemblies [2010/05/19 20:49] galt |
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| * It was used to assemble the Panda genome by BGI. | * It was used to assemble the Panda genome by BGI. | ||
| * Used kolossus which has 1TB and 64cpus. | * Used kolossus which has 1TB and 64cpus. | ||
| - | * Ran with k=31 an k=23. k=31 was better (9k maxcontig) | + | * Ran with k=31 and k=23. k=31 was better (9k maxcontig) |
| * so ran with filling -R to get 12k maxcontig. | * so ran with filling -R to get 12k maxcontig. | ||
| * Then ran the scaffolding steps with 200bp insert size. | * Then ran the scaffolding steps with 200bp insert size. | ||
archive/computer_resources/assemblies.txt · Last modified: 2015/09/02 16:53 by 92.247.181.31
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